Factsheet for VIT_08s0007g07020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00900.t01
VIT_17s0000g09280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	VIT_02s0012g00900.t01	AT4G17950.1	21798944
AT3G58560.1	VIT_17s0000g09280.t01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71803	Soybean	cytosol	26.53	86.96
PGSC0003DMT400029795	Potato	cytosol	87.06	86.78
Solyc10g078950.1.1	Tomato	cytosol	79.93	85.92
KRG96349	Soybean	cytosol	84.91	85.33
KRH68083	Soybean	cytosol	84.91	85.05
KRH38033	Soybean	cytosol	83.08	83.5
KRH71804	Soybean	cytosol	52.4	82.51
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	80.27	81.48
AT3G58560.1	Thale cress	cytosol	79.27	79.4
Bra003342.1-P	Field mustard	cytosol	77.61	79.05
CDX67751	Canola	cytosol	77.45	78.89
Os03t0166800-01	Rice	cytosol	79.1	78.58
CDX98303	Canola	cytosol	76.62	78.04
Os10t0412100-01	Rice	cytosol	77.94	77.69
AT3G58580.1	Thale cress	cytosol	77.61	77.61
OQU91798	Sorghum	cytosol	77.61	77.23
Zm00001d032979_P003	Maize	cytosol	77.28	77.02
Bra014566.1-P	Field mustard	cytosol	76.62	77.0
CDX67753	Canola	cytosol	76.62	77.0
CDY00572	Canola	cytosol	76.62	77.0
Bra003344.1-P	Field mustard	cytosol	73.13	76.96
TraesCS1D01G134400.1	Wheat	cytosol	77.11	76.86
TraesCS1A01G137900.1	Wheat	cytosol	77.11	76.86
GSMUA_Achr9P25420_001	Banana	cytosol	74.3	76.84
CDX88992	Canola	mitochondrion	70.48	76.71
TraesCS1B01G153300.2	Wheat	cytosol	76.95	76.69
HORVU1Hr1G035390.1	Barley	cytosol	76.95	76.69
Bra007403.1-P	Field mustard	cytosol	75.46	76.21
CDX71943	Canola	cytosol	75.79	75.91
GSMUA_Achr4P17200_001	Banana	cytosol	73.47	75.86
Zm00001d014187_P011	Maize	cytosol	75.79	75.79
CDY49233	Canola	cytosol	75.29	75.67
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	71.81	75.04
KXG40109	Sorghum	mitochondrion	76.62	74.52
CDX98305	Canola	plastid	75.46	71.43
Zm00001d027811_P001	Maize	mitochondrion	76.12	71.27
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	68.16	56.3
VIT_18s0001g05590.t01	Wine grape	cytosol	33.83	44.44
VIT_02s0087g00390.t01	Wine grape	mitochondrion	18.08	27.74
VIT_17s0000g03760.t01	Wine grape	nucleus	19.73	25.7
VIT_17s0000g04030.t01	Wine grape	plastid	18.57	25.4
VIT_04s0008g04720.t01	Wine grape	mitochondrion	19.57	15.01

Protein Annotations

EntrezGene:100265801	wikigene:100265801	MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	EMBL:AM428974	ProteinID:CAN73496
ProteinID:CAN73496.1	ProteinID:CBI29976	ProteinID:CBI29976.3	UniProt:D7TIA0	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
EMBL:FN595991	InterPro:IPR036691	EntrezGene:LOC100265801	wikigene:LOC100265801	PFAM:PF03372	PFAM:PF15801
PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	SUPFAM:SSF56219	TIGR:TC53991	UniParc:UPI0001983E93	ArrayExpress:VIT_08s0007g07020
EnsemblPlantsGene:VIT_08s0007g07020	EnsemblPlants:VIT_08s0007g07020.t01	unigene:Vvi.6284	RefSeq:XP_002280990	RefSeq:XP_002280990.1	RefSeq:XP_010653857.1
RefSeq:XP_010653858.1	InterPro:Zfn-C6H2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:20648391..20657716

Molecular Weight (calculated)

66811.6 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.209

Length

603 amino acids

Sequence
(BLAST)

001: MLSVLRVHLP SDIPIVGCEL TPYVLLRRPD KNLTTEDVPE SAPIEGHFLR YKWYRIQSDR KVAVCSVHPS EHATLQCLGC VKAKIPVAKS YHCSPKCFSD
101: AWQHHRVLHD RAASAVNENG NEEEELFGRF NSTGSGSINT SLAPSASSAS LANGSAPLYP AAVTQRSGGE TWFEVGRSKT YTPTADDIGH VLKFECVVVD
201: AETKLTVGHG SNILTSRVIP APSPTPRHLI SVSGVDMVGH LDSDGRISSA GTFTVLSYNI LSDVFATSEL YSYCPSWALS WPYRKQNLLR EIVGYRADIV
301: CLQEIQSDHF EEFFAPELDK HGYQALYKRK TNEVYTGNIH TIDGCATFFR RDRFSHVKKY EVEFNKAAQS LTDAVVPSAQ KKTALNRLVK DNVALIAVLE
401: AKFSYQGADI PGKRQLLCVA NTHINVHQEL KDVKLWQVHT LLKGLEKIAA SADIPMLVCG DFNSVPGSAP HALLAMGKVD PMHPDLAIDP LGILRPASKL
501: THQLPLVSAY SSFARMGVGI GLEQQRRRLD PSTNEPLFTH CTRDFIGTLD YIFYTADSLT VESLLELLDE DSLRKDTALP SPEWSSDHIA LLAEFRCKPR
601: TRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.