CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07083
KXG26554
KXG38867
OQU82226

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KXG38867	AT4G17950.1	21798944
AT3G58560.1	OQU82226	AT4G17950.1	21798944
AT3G58560.1	EES07083	AT4G24690.1	21798944
AT3G58560.1	KXG26554	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032979_P003	Maize	cytosol	98.18	98.35
Zm00001d014187_P011	Maize	cytosol	95.87	96.35
Os10t0412100-01	Rice	cytosol	91.42	91.57
TraesCS1D01G134400.1	Wheat	cytosol	90.26	90.41
TraesCS1B01G153300.2	Wheat	cytosol	90.26	90.41
TraesCS1A01G137900.1	Wheat	cytosol	90.1	90.25
HORVU1Hr1G035390.1	Barley	cytosol	89.93	90.08
KRH71803	Soybean	cytosol	25.08	82.61
KXG40109	Sorghum	mitochondrion	84.32	82.42
VIT_08s0007g07020.t01	Wine grape	cytosol	77.23	77.61
GSMUA_Achr9P25420_001	Banana	cytosol	73.76	76.67
PGSC0003DMT400029795	Potato	cytosol	76.4	76.53
GSMUA_Achr4P17200_001	Banana	cytosol	72.77	75.51
KRH38033	Soybean	cytosol	74.42	75.17
KRG96349	Soybean	cytosol	74.26	75.0
KRH68083	Soybean	cytosol	74.09	74.58
Solyc10g078950.1.1	Tomato	cytosol	68.98	74.51
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.46	74.0
AT3G58560.1	Thale cress	cytosol	73.1	73.59
CDY00572	Canola	cytosol	71.62	72.33
Bra014566.1-P	Field mustard	cytosol	71.45	72.17
CDX67753	Canola	cytosol	71.45	72.17
CDX67751	Canola	cytosol	70.3	71.96
Bra003344.1-P	Field mustard	cytosol	67.82	71.73
AT3G58580.1	Thale cress	cytosol	71.29	71.64
Bra003342.1-P	Field mustard	cytosol	69.97	71.62
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.13	71.55
CDX88992	Canola	mitochondrion	65.35	71.48
CDX98303	Canola	cytosol	69.8	71.45
Bra007403.1-P	Field mustard	cytosol	70.3	71.36
KRH71804	Soybean	cytosol	45.05	71.28
CDX71943	Canola	cytosol	70.63	71.1
CDY49233	Canola	cytosol	70.13	70.83
CDX98305	Canola	plastid	70.63	67.19
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	66.34	55.07
EES19469	Sorghum	plastid	16.17	24.94
EER89572	Sorghum	plastid	17.16	22.22
EES03263	Sorghum	mitochondrion	19.14	13.3

Protein Annotations

EnsemblPlants:OQU91798	EnsemblPlantsGene:SORBI_3001G251100	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:OQU91797.1
ProteinID:OQU91798	ProteinID:OQU91798.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI000B424B9B	UniProt:A0A1Z5S782
MapMan:16.8.2.1.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:27122548..27129777

Molecular Weight (calculated)

67227.9 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.278

Length

606 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEI TPYVLLRRPD GAVSTEDVPE TAPADGQFMR YRWYRIQSDR KVPICSVHPM EQATLQCLGC LKSKIPVAKS YHCSAKCFSD
101: AWQHHKVLHE RASSALNENG AEEEELFGRF GSGGSGVLST AGSGSLSNFG QSPGVNNGPV PLYPSGTDKN SGETWFEVGR LRTYTPTADD IGHALKFECV
201: AVDSEKRSPI GPPTSIMTSR VIPAPTPTPR RLIQVNGDVL GHLDLDSQTS SLGTFTVLSY NILADAYATS DAYSYCPTWA LTWTYRRQNL LREIIGYHAD
301: IICLQEVQVN HFEDFFSPEL DKHGYQALYK KRTTEVYSGN PMAIDGCATF FRRDKFSHVK KYEVEFNKAA QSLTDAIIPA AQKRVALSRL IKDNIALIAV
401: LEAKFGNHGA ENPGKRQLLC VANTHINVHQ DLKDVKLWEV HTLLKGLEKI AVSADIPMLV CGDFNSTPGS SPHALLAMGK VDQHHPDLAI DPLGILRPPS
501: KLNHQLPLVS AYSAFARMVG VGYDLEHQRR RTDPATNEPL FTNCTRDFTG TFDYIFYTAD SLTVDSLLEL LDEESLRKDT ALPSPEWSSD HIALLAEFRC
601: KPRIRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.