Factsheet for GSMUA_Achr9P25420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr5P03370_001
GSMUA_Achr9P01840_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr9P01840_001	AT4G24690.1	21798944
AT3G58560.1	GSMUA_AchrUn_...	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	85.25	86.14
GSMUA_Achr4P17200_001	Banana	cytosol	82.33	82.19
KRH71803	Soybean	cytosol	25.73	81.52
Os10t0412100-01	Rice	cytosol	77.53	74.71
VIT_08s0007g07020.t01	Wine grape	cytosol	76.84	74.3
Os03t0166800-01	Rice	cytosol	77.19	74.14
HORVU1Hr1G035390.1	Barley	cytosol	76.67	73.88
TraesCS1B01G153300.2	Wheat	cytosol	76.67	73.88
OQU91798	Sorghum	cytosol	76.67	73.76
TraesCS1A01G137900.1	Wheat	cytosol	76.5	73.72
TraesCS1D01G134400.1	Wheat	cytosol	76.5	73.72
PGSC0003DMT400029795	Potato	cytosol	75.99	73.22
Zm00001d032979_P003	Maize	cytosol	75.99	73.22
KRG96349	Soybean	cytosol	74.61	72.5
KRH38033	Soybean	cytosol	74.27	72.17
Solyc10g078950.1.1	Tomato	cytosol	69.3	72.01
Zm00001d014187_P011	Maize	cytosol	74.44	71.97
KRH68083	Soybean	cytosol	74.27	71.93
KXG40109	Sorghum	mitochondrion	75.81	71.29
CDX67751	Canola	cytosol	72.38	71.28
Bra003342.1-P	Field mustard	cytosol	72.21	71.11
AT3G58560.1	Thale cress	cytosol	73.41	71.1
CDX98303	Canola	cytosol	71.7	70.61
CDY00572	Canola	cytosol	71.53	69.5
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.67	69.36
CDX67753	Canola	cytosol	71.36	69.33
Bra007403.1-P	Field mustard	cytosol	70.84	69.18
Bra014566.1-P	Field mustard	cytosol	71.18	69.17
AT3G58580.1	Thale cress	cytosol	71.53	69.15
CDY49233	Canola	cytosol	71.01	69.0
Bra003344.1-P	Field mustard	cytosol	67.75	68.94
CDX88992	Canola	mitochondrion	65.35	68.77
CDX71943	Canola	cytosol	71.01	68.77
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	85.76	68.49
Zm00001d027811_P001	Maize	mitochondrion	74.96	67.86
KRH71804	Soybean	cytosol	43.91	66.84
CDX98305	Canola	plastid	70.67	64.68
GSMUA_Achr7P12580_001	Banana	mitochondrion	15.61	28.26
GSMUA_AchrUn_...	Banana	cytosol	14.58	26.81
GSMUA_Achr6P09650_001	Banana	nucleus	16.98	20.97
GSMUA_Achr1P14560_001	Banana	nucleus	19.04	14.4

Protein Annotations

EnsemblPlants:GSMUA_Achr9P25420_001	EnsemblPlants:GSMUA_Achr9T25420_001	EnsemblPlantsGene:GSMUA_Achr9G25420_001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801
SEG:seg	SUPFAM:SSF56219	UniParc:UPI000295E63C	UniProt:M0U3E9	MapMan:16.8.2.1.2.1	:

Description

Carbon catabolite repressor protein 4 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G25420_001]

Coordinates

chr9:-:29909881..29916260

Molecular Weight (calculated)

65118.5 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.264

Length

583 amino acids

Sequence
(BLAST)

001: MLTVLRVHLP SEIPVVGCEI TPYVLLRWPD GSISNDDVPE SAPLNGYCMR YKWYRNLGDQ KVAVCSVHPT EQATLQCLVC LKEKVPIAKS YHCTPRCFSD
101: AWQHHRSLHE RAKKAASENG TDEEEVFGRF NSLNNGPISV YPTTVADKSG EAWSEVARSR TYTPTADDIN HVLKFECVAV DVETRIPVGN VNTVLTSRVI
201: PAPSPTPRHM VPVNGDLLGQ LDLDGRTSSG TFSVLSYNIL SDAYATSEAY SYCPTWALSW PYRRQNLLRE IIGYHADILC LQEVQNDHFE EFFAPELDKH
301: GYQALYKKKT SEVYGGNSNA VDGCATFFRR DRFSHVKKYE VEFNKAAQSV TDVAMTAGQK KVALSRLIKD NIALIVVLEA KFSNHGTDNS GKRQLICVAN
401: THVSVHHEHK DVKLWQVHTL LKGLEKIAVS ADIPMLVCGD FNAVPGSAPH ALLANGKVEP LHLDLAVDPL GILRPTSKIT HQLPLVSAYS SFARMVGVSP
501: GLEQQRRRMD ASTHEPLFTN CTRDFIGTVD YIFYTADSLS VESLLELLDE ENLRKNTAIP SPEWSSDHIA LLAEFRCKPR IRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.