CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03220
KRH04337
KRH28286
KRH57136
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KRH04337	AT4G17950.1	21798944
AT3G58560.1	KRH28286	AT4G17950.1	21798944
AT3G58560.1	KRH58200	AT4G17950.1	21798944
AT3G58560.1	KRH77206	AT4G17950.1	21798944
AT3G58560.1	KRH03220	AT4G24690.1	21798944
AT3G58560.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38033	Soybean	cytosol	97.91	62.5
KRG96349	Soybean	cytosol	88.25	56.33
KRH68083	Soybean	cytosol	88.25	56.15
Solyc10g078950.1.1	Tomato	cytosol	81.72	55.79
VIT_08s0007g07020.t01	Wine grape	cytosol	82.51	52.4
PGSC0003DMT400029795	Potato	cytosol	80.94	51.24
AT3G58560.1	Thale cress	cytosol	75.72	48.17
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	74.41	47.98
CDX67751	Canola	cytosol	73.37	47.47
Bra003342.1-P	Field mustard	cytosol	73.11	47.3
Bra014566.1-P	Field mustard	cytosol	73.89	47.17
CDY00572	Canola	cytosol	73.89	47.17
CDX98303	Canola	cytosol	72.06	46.62
CDX67753	Canola	cytosol	72.85	46.5
AT3G58580.1	Thale cress	cytosol	71.54	45.44
Os10t0412100-01	Rice	cytosol	71.54	45.29
Zm00001d032979_P003	Maize	cytosol	71.28	45.12
OQU91798	Sorghum	cytosol	71.28	45.05
Os03t0166800-01	Rice	cytosol	71.28	44.98
CDX71943	Canola	cytosol	70.5	44.85
Bra007403.1-P	Field mustard	cytosol	69.71	44.72
Bra003344.1-P	Field mustard	cytosol	66.84	44.68
TraesCS1D01G134400.1	Wheat	cytosol	70.23	44.46
TraesCS1B01G153300.2	Wheat	cytosol	70.23	44.46
TraesCS1A01G137900.1	Wheat	cytosol	70.23	44.46
CDY49233	Canola	cytosol	69.45	44.33
HORVU1Hr1G035390.1	Barley	cytosol	69.97	44.3
GSMUA_Achr9P25420_001	Banana	cytosol	66.84	43.91
CDX88992	Canola	mitochondrion	63.45	43.86
GSMUA_Achr4P17200_001	Banana	cytosol	66.84	43.84
Zm00001d014187_P011	Maize	cytosol	68.67	43.62
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	65.27	43.33
KXG40109	Sorghum	mitochondrion	69.45	42.9
CDX98305	Canola	plastid	71.02	42.7
Zm00001d027811_P001	Maize	mitochondrion	69.71	41.46
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	67.36	35.34
KRH41616	Soybean	cytosol	12.27	12.81
KRH60320	Soybean	plastid	14.36	12.64
KRH39729	Soybean	plastid	11.23	11.0
KRH39200	Soybean	nucleus, plastid	11.75	10.51
KRH48475	Soybean	cytosol	7.05	9.41
KRH16019	Soybean	plastid	14.36	6.46
KRH05096	Soybean	cytosol	6.53	4.9
KRH76418	Soybean	nucleus	3.66	4.83
KRH71803	Soybean	cytosol	0.52	1.09

Protein Annotations

EMBL:ACUP02001072	EnsemblPlants:KRH71804	EnsemblPlantsGene:GLYMA_02G1697001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	InterPro:Zfn-C6H2	MetaCyc:PWY-7799	MetaCyc:PWY-7800	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29
PFAM:PF03372	PFAM:PF15801	ProteinID:KRH71804	ProteinID:KRH71804.1	SEG:seg	SUPFAM:SSF56219
UniParc:UPI0006EE13C0	UniProt:A0A0R0KXH6	MapMan:16.8.2.1.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:26245492..26250812

Molecular Weight (calculated)

42777.3 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.398

Length

383 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEL TPYVLLRRPD KTVSTDDVPE TTPLDGHFLR YKWYRVQSDK KVAVCSIHPS EQATLQCLGC VKAKIPVSKS YHCTTKCFSD
101: AWQHHRVLHD RAASALNENG NEEEEVFGRF NSTGSGATNS SLSASASSAS LTNGSATPLY PAAITQRSGE TWFEVGRSKT YTPTADDVGH VLKFECVVVD
201: AETKLPVGHA NTILTSRVIP APSPIPRRII SVDGMAHLDV DGRMTSSGTF TVLSYNVLSE AYASNDLYNY CPSWALSWPY RRQNLLREIV GYRPDIICLQ
301: EVQSDHYDEF FSPELDKHGY YGLYKRKEVY SGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAT IPTTQKKTAL NRP

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.