CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03220
KRH04337
KRH28286
KRH57136
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KRH04337	AT4G17950.1	21798944
AT3G58560.1	KRH28286	AT4G17950.1	21798944
AT3G58560.1	KRH58200	AT4G17950.1	21798944
AT3G58560.1	KRH77206	AT4G17950.1	21798944
AT3G58560.1	KRH03220	AT4G24690.1	21798944
AT3G58560.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71803	Soybean	cytosol	30.17	98.37
KRH71804	Soybean	cytosol	62.5	97.91
KRG96349	Soybean	cytosol	90.5	90.5
KRH68083	Soybean	cytosol	90.67	90.37
VIT_08s0007g07020.t01	Wine grape	cytosol	83.5	83.08
PGSC0003DMT400029795	Potato	cytosol	81.83	81.16
Solyc10g078950.1.1	Tomato	cytosol	75.17	80.39
CDX67751	Canola	cytosol	76.67	77.7
AT3G58560.1	Thale cress	cytosol	77.83	77.57
Bra003342.1-P	Field mustard	cytosol	76.5	77.53
Bra014566.1-P	Field mustard	cytosol	77.33	77.33
CDY00572	Canola	cytosol	77.0	77.0
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	76.0	76.77
CDX98303	Canola	cytosol	75.67	76.69
CDX88992	Canola	mitochondrion	70.5	76.35
CDX67753	Canola	cytosol	76.17	76.17
AT3G58580.1	Thale cress	cytosol	76.17	75.79
Bra003344.1-P	Field mustard	cytosol	72.33	75.74
Os10t0412100-01	Rice	cytosol	75.83	75.21
Zm00001d032979_P003	Maize	cytosol	75.17	74.55
OQU91798	Sorghum	cytosol	75.17	74.42
GSMUA_Achr9P25420_001	Banana	cytosol	72.17	74.27
TraesCS1D01G134400.1	Wheat	cytosol	74.83	74.21
TraesCS1A01G137900.1	Wheat	cytosol	74.83	74.21
HORVU1Hr1G035390.1	Barley	cytosol	74.67	74.05
Bra007403.1-P	Field mustard	cytosol	73.67	74.04
CDX71943	Canola	cytosol	74.17	73.92
TraesCS1B01G153300.2	Wheat	cytosol	74.5	73.88
Os03t0166800-01	Rice	cytosol	74.67	73.81
CDY49233	Canola	cytosol	73.5	73.5
GSMUA_Achr4P17200_001	Banana	cytosol	71.5	73.46
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.33	73.14
Zm00001d014187_P011	Maize	cytosol	73.17	72.8
CDX98305	Canola	plastid	75.0	70.64
KXG40109	Sorghum	mitochondrion	72.67	70.32
Zm00001d027811_P001	Maize	mitochondrion	73.17	68.17
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	66.0	54.25
KRH48475	Soybean	cytosol	14.5	30.31
KRH41616	Soybean	cytosol	16.5	26.98
KRH39729	Soybean	plastid	17.33	26.6
KRH39200	Soybean	nucleus, plastid	18.5	25.93
KRH76418	Soybean	nucleus	12.33	25.52
KRH60320	Soybean	plastid	18.5	25.52
KRH16019	Soybean	plastid	19.5	13.73
KRH05096	Soybean	cytosol	9.17	10.78

Protein Annotations

EntrezGene:100819402	MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	EMBL:ACUP02005584	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
EnsemblPlantsGene:GLYMA_09G105600	UniProt:I1L2J3	InterPro:IPR036691	EnsemblPlants:KRH38033	ProteinID:KRH38033	ProteinID:KRH38033.1
ProteinID:KRH38034.1	PFAM:PF03372	PFAM:PF15801	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	MetaCyc:PWY-7799
MetaCyc:PWY-7800	SUPFAM:SSF56219	UniParc:UPI0002338188	InterPro:Zfn-C6H2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:19582205..19590885

Molecular Weight (calculated)

66748.2 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.292

Length

600 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEL TPYVLLRRPD KTVSTDDVPE TAPLDGHFLR YKWYRVQSDK KVAVCSIHPS EQATLQCLGC VKAKIPVSKS YHCTTKCFSD
101: AWQHHRVLHD RAASALNENG NEEEEVFGRF NSTGSGATNS SLSASASSAS LTNGSATPLY PAAITQRSGE TWFEVGRSKT YTPTADDIGH VLKFECVAVD
201: AETKLPVGHV NTILTSRVIP APSPIPRRLI PVDGMAHLDV DGRMTSSGTF TVLSYNVLSE AYASNDLYNY CPSWALSWPY RRQNLLREII GYRPDIICLQ
301: EVQSDHYDEF FSPELDKHGY HGLYKRKTNE VYSGNTNTID GCATFFRRDR FSHVKKYEVE FNKAAQSLTE ATIPTTQKKT ALNRLVKDNV ALIVVLEAKV
401: NNQPFDNAGK RQLLCVANTH VNVSQDLKDV KLWQVHTLLK GLEKIAASAD IPMLVCGDFN SVPGSAPHAL LAMGKVDPSH PDLAVDPLNI LRPHSKLVHQ
501: LPLVSAYTSF ARTVGLGYEQ HKRRLDGGTN EPLFTNVTRD FIGTLDYIFY TADSLVVESL LELLDEESLR KDTALPSPEW SSDHIALLAE FRCCKNKSRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.