Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003342.1-P | Field mustard | cytosol | 88.54 | 90.03 |
| CDX67751 | Canola | cytosol | 88.37 | 89.86 |
| CDX98303 | Canola | cytosol | 86.88 | 88.34 |
| KRH71803 | Soybean | cytosol | 25.08 | 82.07 |
| VIT_08s0007g07020.t01 | Wine grape | cytosol | 79.4 | 79.27 |
| KRG96349 | Soybean | cytosol | 78.24 | 78.5 |
| KRH68083 | Soybean | cytosol | 78.41 | 78.41 |
| KRH38033 | Soybean | cytosol | 77.57 | 77.83 |
| PGSC0003DMT400029795 | Potato | cytosol | 78.07 | 77.69 |
| AT3G58580.1 | Thale cress | cytosol | 76.25 | 76.12 |
| Solyc10g078950.1.1 | Tomato | cytosol | 70.93 | 76.11 |
| KRH71804 | Soybean | cytosol | 48.17 | 75.72 |
| Os10t0412100-01 | Rice | cytosol | 73.92 | 73.55 |
| GSMUA_Achr9P25420_001 | Banana | cytosol | 71.1 | 73.41 |
| Solyc03g059010.2.1 | Tomato | cytosol, nucleus, plastid | 72.43 | 73.4 |
| OQU91798 | Sorghum | cytosol | 73.59 | 73.1 |
| Zm00001d032979_P003 | Maize | cytosol | 73.42 | 73.06 |
| GSMUA_Achr4P17200_001 | Banana | cytosol | 70.76 | 72.95 |
| Zm00001d014187_P011 | Maize | cytosol | 72.59 | 72.47 |
| HORVU1Hr1G035390.1 | Barley | cytosol | 72.76 | 72.4 |
| TraesCS1A01G137900.1 | Wheat | cytosol | 72.59 | 72.23 |
| TraesCS1B01G153300.2 | Wheat | cytosol | 72.59 | 72.23 |
| TraesCS1D01G134400.1 | Wheat | cytosol | 72.59 | 72.23 |
| GSMUA_Achr9P11040_001 | Banana | cytosol, peroxisome, vacuole | 69.1 | 72.1 |
| Os03t0166800-01 | Rice | cytosol | 72.59 | 71.99 |
| KXG40109 | Sorghum | mitochondrion | 71.59 | 69.52 |
| Zm00001d027811_P001 | Maize | mitochondrion | 70.76 | 66.15 |
| GSMUA_Achr6P29710_001 | Banana | endoplasmic reticulum, golgi | 63.95 | 52.74 |
| AT1G31530.1 | Thale cress | cytosol | 12.46 | 26.5 |
| AT1G31500.7 | Thale cress | mitochondrion | 17.77 | 25.36 |
| AT3G18500.3 | Thale cress | nucleus | 18.77 | 25.17 |
| AT1G73875.1 | Thale cress | nucleus | 18.44 | 24.45 |
| AT5G11350.4 | Thale cress | nucleus | 20.1 | 16.03 |
Protein Annotations
| MapMan:16.8.2.1.2.1 | Gene3D:3.60.10.10 | EntrezGene:825025 | UniProt:A0A178VHZ0 | ProteinID:AEE79799.1 | EMBL:AF462845 |
| ArrayExpress:AT3G58560 | EnsemblPlantsGene:AT3G58560 | RefSeq:AT3G58560 | TAIR:AT3G58560 | RefSeq:AT3G58560-TAIR-G | EnsemblPlants:AT3G58560.1 |
| TAIR:AT3G58560.1 | EMBL:AY133538 | Unigene:At.23801 | ProteinID:CAB68194.1 | ncoils:Coil | InterPro:Endo/exonu/phosph_ase_sf |
| InterPro:Endo/exonuclease/phosphatase | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005975 | GO:GO:0005986 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019252 | GO:GO:0046872 | GO:GO:0090305 |
| GO:GO:0090503 | InterPro:IPR036691 | RefSeq:NP_191415.2 | ProteinID:OAP04502.1 | PFAM:PF03372 | PFAM:PF15801 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR12121 | PANTHER:PTHR12121:SF29 | UniProt:Q8W0Z9 | SUPFAM:SSF56219 | UniParc:UPI00000A5F3B |
| InterPro:Zfn-C6H2 | SEG:seg | : | : | : | : |
Description
CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
Coordinates
chr3:-:21650565..21654200
Molecular Weight (calculated)
66764.9 Da
IEP (calculated)
7.398
GRAVY (calculated)
-0.199
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.