Factsheet for Os10t0412100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0593700-01
Os04t0476800-01
Os04t0589900-01
Os10t0572900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	Os04t0589900-01	AT4G17950.1	21798944
AT3G58560.1	Os10t0572900-02	AT4G17950.1	21798944
AT3G58560.1	Os02t0593700-01	AT4G24690.1	21798944
AT3G58560.1	Os04t0476800-01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134400.1	Wheat	cytosol	91.9	91.9
TraesCS1B01G153300.2	Wheat	cytosol	91.9	91.9
HORVU1Hr1G035390.1	Barley	cytosol	91.9	91.9
TraesCS1A01G137900.1	Wheat	cytosol	91.74	91.74
OQU91798	Sorghum	cytosol	91.57	91.42
Zm00001d032979_P003	Maize	cytosol	90.91	90.91
Zm00001d014187_P011	Maize	cytosol	89.42	89.72
Os03t0166800-01	Rice	cytosol	85.45	85.17
KRH71803	Soybean	cytosol	25.62	84.24
VIT_08s0007g07020.t01	Wine grape	cytosol	77.69	77.94
GSMUA_Achr9P25420_001	Banana	cytosol	74.71	77.53
PGSC0003DMT400029795	Potato	cytosol	76.86	76.86
GSMUA_Achr4P17200_001	Banana	cytosol	73.55	76.2
KRH38033	Soybean	cytosol	75.21	75.83
KRG96349	Soybean	cytosol	74.55	75.17
Solyc10g078950.1.1	Tomato	cytosol	69.42	74.87
KRH68083	Soybean	cytosol	74.38	74.75
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.58	74.0
AT3G58560.1	Thale cress	cytosol	73.55	73.92
CDY00572	Canola	cytosol	73.06	73.67
Bra014566.1-P	Field mustard	cytosol	72.73	73.33
CDX67753	Canola	cytosol	72.73	73.33
Bra003344.1-P	Field mustard	cytosol	69.26	73.12
CDX88992	Canola	mitochondrion	66.78	72.92
CDX67751	Canola	cytosol	71.24	72.8
Bra003342.1-P	Field mustard	cytosol	71.07	72.64
CDX98303	Canola	cytosol	70.91	72.47
AT3G58580.1	Thale cress	cytosol	72.07	72.31
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.41	71.72
KRH71804	Soybean	cytosol	45.29	71.54
Bra007403.1-P	Field mustard	cytosol	70.41	71.36
CDX71943	Canola	cytosol	70.91	71.26
CDY49233	Canola	cytosol	70.25	70.83
CDX98305	Canola	plastid	71.9	68.29
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	67.11	55.62
Os06t0264900-00	Rice	plastid	13.22	26.14
Os05t0389500-02	Rice	mitochondrion	15.87	24.68
Os01t0610600-01	Rice	mitochondrion	20.33	13.62

Protein Annotations

MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	EntrezGene:4348610	ProteinID:ABB47598.1	ProteinID:ABB47599.1	ProteinID:BAF26501.1
ProteinID:BAT10822.1	ProteinID:BAT10823.1	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0004527	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036691	EnsemblPlantsGene:Os10g0412100	EnsemblPlants:Os10t0412100-01
PFAM:PF03372	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	UniProt:Q338D5	SUPFAM:SSF56219	UniParc:UPI00005E1E76
RefSeq:XP_015614670.1	SEG:seg	:	:	:	:

Description

CARBON CATABOLITE REPRESSOR 4ACarbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation (Os10t0412100-01);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-02);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-03)

Coordinates

chr10:-:14357065..14362380

Molecular Weight (calculated)

67210.0 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.242

Length

605 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEI TPYVLLRLPT GVVSTDDVPE AAPADGYFMR YRWYRIQSDR KVAICSVHPM EQATIQCLGC VKSKIPVAKS YHCSAKCFSD
101: AWQHHRVLHE RASSALNENG AEEEELFGRF GSTGSGVLST TGSGSMSNLG QSPGLNNGPV PLYPSGTDKN SGETWYEVGR TRTYTPTADD IGHVLRFECV
201: SVDAEKKVPV GPPTSIMTSR VIPAPTPTPR RLIQVNGDVL SHLDLDSQTS FGTFSVLSYN ILADAYATSD AYSYCPTWAL SWTYRRQNLM REIIGYHADI
301: ICLQEVQLNH FEDFFSPELD KHGYQALYKK RTTEVYTGAP HAIDGCATFF RRDKFSHVKK YEVEFNKAAQ SLTDAIIPST QRRVALSRLI KDNVALIAVL
401: EAKFGNHGTD NPGKRQLLCV ANTHVNVHQD LKDVKLWEVQ TLLKGLEKIA VSADIPMLVC GDFNSVPGSS PHGLLAMGKV DQLHPDLAID PLGILRPASK
501: LTHQLPLVSA YSSFARMVGV GYDLEHQRRR MDPATNEPLF TNCTRDFTGT VDYIFYTADS LSVESLLELL DEESLRKDTA LPSPEWSSDH IALLAEFRCK
601: PRIRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.