CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88992	Canola	mitochondrion	91.17	98.74
CDX67753	Canola	cytosol	95.17	95.17
AT3G58580.1	Thale cress	cytosol	93.17	92.7
CDX71943	Canola	cytosol	91.67	91.36
CDY49233	Canola	cytosol	90.83	90.83
CDX98305	Canola	plastid	94.17	88.7
KRH71803	Soybean	cytosol	25.67	83.7
CDX67751	Canola	cytosol	76.83	77.87
CDX98303	Canola	cytosol	76.67	77.7
KRH38033	Soybean	cytosol	77.0	77.0
PGSC0003DMT400029795	Potato	cytosol	77.5	76.86
KRG96349	Soybean	cytosol	76.67	76.67
VIT_08s0007g07020.t01	Wine grape	cytosol	77.0	76.62
KRH68083	Soybean	cytosol	76.5	76.25
Solyc10g078950.1.1	Tomato	cytosol	70.67	75.58
KRH71804	Soybean	cytosol	47.17	73.89
Os10t0412100-01	Rice	cytosol	73.67	73.06
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	71.33	72.05
GSMUA_Achr4P17200_001	Banana	cytosol	70.0	71.92
TraesCS1A01G137900.1	Wheat	cytosol	72.5	71.9
HORVU1Hr1G035390.1	Barley	cytosol	72.5	71.9
TraesCS1D01G134400.1	Wheat	cytosol	72.5	71.9
TraesCS1B01G153300.2	Wheat	cytosol	72.5	71.9
OQU91798	Sorghum	cytosol	72.33	71.62
Zm00001d032979_P003	Maize	cytosol	72.17	71.57
GSMUA_Achr9P25420_001	Banana	cytosol	69.5	71.53
Os03t0166800-01	Rice	cytosol	72.0	71.17
Zm00001d014187_P011	Maize	cytosol	71.0	70.65
KXG40109	Sorghum	mitochondrion	72.17	69.84
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	67.0	69.67
Zm00001d027811_P001	Maize	mitochondrion	71.67	66.77
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	63.0	51.78
CDY12304	Canola	plastid	17.67	26.5
CDY12415	Canola	plastid	16.17	26.08
CDY27147	Canola	plastid	16.5	25.65
CDY24484	Canola	mitochondrion	19.0	25.33
CDX92241	Canola	mitochondrion, nucleus, plastid	19.0	25.33
CDX96494	Canola	plastid	18.33	24.94
CDY62302	Canola	mitochondrion, plastid	17.67	24.65
CDX73024	Canola	plastid	18.5	24.45
CDX97099	Canola	plastid	20.17	16.09
CDX69764	Canola	mitochondrion, plastid	19.67	15.61
CDX97100	Canola	plastid	0.17	0.14

Protein Annotations

EnsemblPlants:CDY00572	EnsemblPlantsGene:GSBRNA2T00110330001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:CDY00572
ProteinID:CDY00572.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0004EF4CD0	MapMan:16.8.2.1.2.1	:

Description

BnaC04g23530D

Coordinates

chrLK031920:-:364604..368771

Molecular Weight (calculated)

67065.2 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.275

Length

600 amino acids

Sequence
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KTAATDDVPE SAPLDGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRALVAKS YHCSPKCFTD
101: AWQHHKTLHE RAAAENGNEE DELTRFNSTG SGVLASTLSG SMSNLTLANN GPTPFYPSSI TQKNGGETLI EVGGCKTYTP TADDIGYVLK FECVVANAET
201: KQFVGHPSTI LTSRVIPAPS PSPRRLIPVN GADVMGHLDQ DGRIQSAGSF TVLSYNILSD TSASSDLYSY CPPWALSWPY RRQNLLREIV GYRADVVCLQ
301: EVQSDHFHEI FAPELDKHGY QALYKRKTNE VLSGSTSAID GCATFFRRDR FSHVKKYDVE FNKAAQSLTE AIIPHTQKRT ALNRLVKDNI ALIVVLESKF
401: GNQPTDPSGK RQLICVANTH VNVQQELKDV KLWQVHTLLK GLEKIAASAD IPMLVCGDFN TLPGSAPHTL LVMGKVDPLH PDLMVDPLNI LRPHTKLTHQ
501: LPLVSAYSSF VRPVMGLGLE QHRRRMDLNT NEPLFTNCTR EFIGTHDYIF YTADTLMVES LLELLDEDGL RKDTALPSPE WSSNHIALLA EFRCMPRTRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.