CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023195.1-P	Field mustard	nucleus	88.75	97.8
CDY62302	Canola	mitochondrion, plastid	95.5	88.84
CDY27147	Canola	plastid	84.0	87.05
CDY12415	Canola	plastid	80.75	86.83
AT1G31500.7	Thale cress	mitochondrion	83.75	79.38
VIT_02s0087g00390.t01	Wine grape	mitochondrion	60.25	61.32
PGSC0003DMT400040652	Potato	cytosol, plastid	54.5	59.89
KRH39729	Soybean	plastid	58.0	59.34
KRH76418	Soybean	nucleus	41.0	56.55
Solyc08g075010.2.1	Tomato	mitochondrion	54.5	56.04
GSMUA_AchrUn_...	Banana	cytosol	43.25	54.57
Os05t0389500-02	Rice	mitochondrion	51.5	52.96
EES19469	Sorghum	plastid	51.5	52.42
TraesCS1D01G243100.1	Wheat	mitochondrion	50.75	51.26
TraesCS1B01G254600.1	Wheat	mitochondrion	50.75	51.26
TraesCS1A01G243100.1	Wheat	mitochondrion	50.75	51.26
Zm00001d038091_P006	Maize	plastid	52.25	50.85
CDY24484	Canola	mitochondrion	23.25	20.67
CDX92241	Canola	mitochondrion, nucleus, plastid	23.25	20.67
CDX96494	Canola	plastid	21.75	19.73
CDX98303	Canola	cytosol	28.5	19.26
CDX73024	Canola	plastid	21.75	19.16
CDX67751	Canola	cytosol	28.0	18.92
CDX88992	Canola	mitochondrion	25.75	18.59
CDX67753	Canola	cytosol	26.75	17.83
CDY49233	Canola	cytosol	26.5	17.67
CDY00572	Canola	cytosol	26.5	17.67
CDX71943	Canola	cytosol	26.5	17.61
CDX98305	Canola	plastid	26.75	16.8
CDX97099	Canola	plastid	23.0	12.23
CDX69764	Canola	mitochondrion, plastid	22.75	12.04
CDX97100	Canola	plastid	0.25	0.14

Protein Annotations

EnsemblPlants:CDY12304	EnsemblPlantsGene:GSBRNA2T00061397001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372	ProteinID:CDY12304	ProteinID:CDY12304.1	SEG:seg
SUPFAM:SSF56219	UniParc:UPI0004EF32ED	UniProt:A0A078FH12	MapMan:35.1	:	:

Description

BnaA09g25040DBnaA09g25040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH12]

Coordinates

chrLK032019:+:754232..758072

Molecular Weight (calculated)

45072.5 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.388

Length

400 amino acids

Sequence
(BLAST)

001: MFNTTSLLHL PGPILPSFTT ISCGVCRKIV SRRMSTNPPM EPKVRNFESV EEADDKHSIS KSDGIRFRLV SYNILAQVYV KSSLLPHSPP ACLKWKARSH
101: AILGVLKKLE ADFFCLQEVD EYDSFYRKNM DSLGYSGIYI QRTGQRKRDG CAIFYKPSCA ELVAKERIEY NDLLDSVKAD SVQETETSNE SKGDENAKDS
201: RKDSRDLNDP LVRLKRDCVG IMAAFKINKP FHQVVIVANT HLYWDPELAD VKLAQAKYLL SRLDQFKTLI SNEFECTPSL LLSGDFNSIP GDKVYSYLVS
301: GNGKPAETIE EEEEAPVPLC SAYEVTRGEP KFTNCTPGFT NTLDYIFFSP SDFIKPVSIL QLPEPESPDV VGFLPNNHHP SDHLPIGAEF EISRNREFCS

Best Arabidopsis Sequence Match ( AT1G31500.1 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPSS RVCRKVISRR MSTNPAIEPK VRKFESVEGV DIGSRNKSDG IRFRLVSYNI LAQVYVKSAL LPHSPPACLK WKARSHAILS
101: VLKNLQADFF CLQEVDEYDS FYRNNMDSLG YSGIYIQRTG QRKRDGCAIF YKPSCAELVT KERIEYNDLV DSIKADSVSC SEQKIETSNE GKDSRKDSRD
201: LNDPLVRLKR DCVGIMAAFR INKPFQHIVI VANTHLYWDP ELADVKLAQA KYLLSRLAQF KTLISDEFEC TPSLLLAGDF NSIPGDMVYS YLVSGNAKPT
301: ETIEEEEAPV PLSSVYEVTR GEPKFTNCTP GFTNTLDYIF ISPSDFIKPV SILQLPEPDS PDVVGFLPNH HHPSDHLPIG AEFEIRRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.