Factsheet for TraesCS1B01G254600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G243100.1	Wheat	mitochondrion	96.72	96.72
TraesCS1A01G243100.1	Wheat	mitochondrion	95.96	95.96
Os05t0389500-02	Rice	mitochondrion	80.05	81.49
EES19469	Sorghum	plastid	76.26	76.84
Zm00001d038091_P006	Maize	plastid	75.76	72.99
GSMUA_AchrUn_...	Banana	cytosol	50.0	62.46
Bra023195.1-P	Field mustard	nucleus	50.0	54.55
PGSC0003DMT400040652	Potato	cytosol, plastid	50.0	54.4
VIT_02s0087g00390.t01	Wine grape	mitochondrion	53.03	53.44
Bra038426.1-P	Field mustard	plastid	50.76	52.34
CDY12415	Canola	plastid	48.99	52.15
CDY27147	Canola	plastid	50.51	51.81
Solyc08g075010.2.1	Tomato	mitochondrion	50.51	51.41
KRH39729	Soybean	plastid	50.25	50.9
CDY12304	Canola	plastid	51.26	50.75
KRH76418	Soybean	nucleus	36.87	50.34
CDY62302	Canola	mitochondrion, plastid	52.53	48.37
AT1G31500.7	Thale cress	mitochondrion	51.01	47.87
AT1G31530.1	Thale cress	cytosol	28.28	39.58
TraesCS7B01G114200.1	Wheat	plastid	21.97	19.51
TraesCS1B01G153300.2	Wheat	cytosol	23.48	15.37
TraesCS3B01G248600.1	Wheat	mitochondrion	20.71	8.95

Protein Annotations

EnsemblPlants:TraesCS1B01G254600.1	EnsemblPlantsGene:TraesCS1B01G254600	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372	SEG:seg	SUPFAM:SSF56219	MapMan:35.1

Description

No Description!

Coordinates

chr1B:-:448744086..448750729

Molecular Weight (calculated)

43896.1 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.386

Length

396 amino acids

Sequence
(BLAST)

001: MLLKPQAIWA ASLPLFLGRR LLPKSSPSTP HSGRRLPLRP ICKRRMSAQA EPRFAPLPTA QSEPDAGADG YQFRLVSYNI LAQVYVKSAF FPHSPSASLK
101: WKARSKAVLT ELKSFNADLM CIQELDEYET FYRKNMESSG YSSIYVQRSG DKRDGCGIFY KPKSVELLQK EVIHYNDLVE TCHLNDNVIS APSNNSSPSE
201: ESSGKEDNKK RGDPNDPRVR LKRDCVGLLA AFKLGDPCEH ILIVANTHIY WDPEWIDVKL AQAKYLLSKV SEFEKIIANK FTCKPSVIIA GDFNSTPGDK
301: VYNYLLSASA ESTDEALVKL RSLYAENGGE PEFTNCTPGF TGTLDYIFLS DGGSIKPSSL LRIPRGGSPD VEGGLPNFHH PSDHLPIGAD FQVLSS

Best Arabidopsis Sequence Match ( AT1G31500.1 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPSS RVCRKVISRR MSTNPAIEPK VRKFESVEGV DIGSRNKSDG IRFRLVSYNI LAQVYVKSAL LPHSPPACLK WKARSHAILS
101: VLKNLQADFF CLQEVDEYDS FYRNNMDSLG YSGIYIQRTG QRKRDGCAIF YKPSCAELVT KERIEYNDLV DSIKADSVSC SEQKIETSNE GKDSRKDSRD
201: LNDPLVRLKR DCVGIMAAFR INKPFQHIVI VANTHLYWDP ELADVKLAQA KYLLSRLAQF KTLISDEFEC TPSLLLAGDF NSIPGDMVYS YLVSGNAKPT
301: ETIEEEEAPV PLSSVYEVTR GEPKFTNCTP GFTNTLDYIF ISPSDFIKPV SILQLPEPDS PDVVGFLPNH HHPSDHLPIG AEFEIRRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.