Factsheet for Bra022326.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92241	Canola	mitochondrion, nucleus, plastid	92.84	95.11
CDY24484	Canola	mitochondrion	89.15	91.33
AT3G18500.3	Thale cress	nucleus	77.01	79.06
VIT_17s0000g04030.t01	Wine grape	plastid	53.15	55.56
Solyc03g119710.2.1	Tomato	plastid	50.33	53.46
KRH60320	Soybean	plastid	48.81	51.72
KRH41616	Soybean	cytosol	40.13	50.41
GSMUA_Achr7P12580_001	Banana	mitochondrion	32.54	46.58
Zm00001d045673_P003	Maize	plastid	40.13	41.76
EER89572	Sorghum	plastid	41.0	40.38
TraesCS7B01G114200.1	Wheat	plastid	38.39	39.69
TraesCS7A01G206900.2	Wheat	plastid	38.39	39.6
TraesCS7D01G209700.2	Wheat	plastid	38.18	39.37
Os06t0264900-00	Rice	plastid	26.03	39.22
HORVU0Hr1G020140.2	Barley	mitochondrion, nucleus	37.96	38.04
Bra015956.1-P	Field mustard	plastid	37.31	37.8
HORVU7Hr1G042150.3	Barley	nucleus, plastid	38.83	36.53
Bra023195.1-P	Field mustard	nucleus	18.0	22.86
Bra038426.1-P	Field mustard	plastid	18.44	22.14
Bra008968.1-P	Field mustard	mitochondrion, plastid	35.79	21.8
Bra014566.1-P	Field mustard	cytosol	24.3	18.67
Bra003344.1-P	Field mustard	cytosol	22.56	18.15
Bra007403.1-P	Field mustard	cytosol	23.43	18.09
Bra003342.1-P	Field mustard	cytosol	23.21	18.07

Protein Annotations

EnsemblPlants:Bra022326.1	EnsemblPlants:Bra022326.1-P	EnsemblPlantsGene:Bra022326	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF51	PFAM:PF03372	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0002548159
UniProt:M4E0M9	MapMan:35.1	:	:	:	:

Description

AT3G18500 (E=9e-171) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G73875.1); Has 964 Blast hits to 937 proteins in 164 species: Archae - 0; Bacteria - 37; Metazoa - 442; Fungi - 164; Plants - 170; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

Coordinates

chrA05:-:18388438..18391183

Molecular Weight (calculated)

51972.5 Da

IEP (calculated)

9.535

GRAVY (calculated)

-0.408

Length

461 amino acids

Sequence
(BLAST)

001: MRSVACSWSR PTGASRISIG GHLSSGFHRS HHLSSSVSFP SSGDASFLVS CSSTSGPSDH NDSSNRSYSR RWYNPLPRRR HADQMPTSRI ARDWIDSDTS
101: TVSEDSDRFT VVSYNILGDR NSSYHKDLYS NVSFPYLKWG YRKRLICEEL IRLRPDIICM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNI DGCAMFWKAD
201: RFRVLERENI EFSQFGMRDN VAQLSVLELR KSKSRRLLVG NIHVLYNPSR GDVKLGQIRS LCSKAHLLSK KWGDIPIVLG GDYNSLPQSP LYNFLASSEL
301: NIMKHDKREL SGQRNRLPNQ VLEAGGKPSN TITSINRCLS SSWTNEEIRL ATGQENSYWA VHPLKLNSSY ASVKGSTNTR DSTGEPLATS YHSKFLGTVD
401: YLWYSDGIAP ARVLDTLPID VLCRTRGLPC QVSFVTNTIV LLLIQWPNHV VLFVFGFAGV G

Best Arabidopsis Sequence Match ( AT3G18500.3 )
(BLAST)

001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT
101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNV DGCAMFWKAD
201: RFGVLERENI EFSQFGMRDN VAQLAVLELR KSNKSRKILL GNIHVLYNPN QGDVKLGQVR SLCSKAHLLS KKWGDIPIVL CGDFNSTPKS PLYNFLASSE
301: LNVMEHDKKE LSGQKNCRPT KVLETGSKSS NTITFRSFCS SWTKEEIRVA TGQENSYWAA HPLKLNSSYA SVKGSANTRD SVGEPLATSY HSKFLGTVDY
401: LWYSDGLLPA RVLDTLPIDV LCKTKGLPCQ ELGSDHLALV SEFVFEPDG

Arabidopsis Description

DNAse I-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.