CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67751
CDX98303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	CDX67751	AT3G58560.1	21798944
AT3G27290.1	CDX98303	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039085.1-P	Field mustard	cytosol	74.05	72.87
CDY20054	Canola	cytosol	73.51	71.2
AT3G27290.1	Thale cress	cytosol	53.51	51.83
CDY39176	Canola	cytosol	31.62	29.7
CDY04188	Canola	cytosol	31.08	29.49
CDY40985	Canola	cytosol	30.27	28.5
PGSC0003DMT400017823	Potato	cytosol	30.81	28.01
Solyc02g068000.2.1	Tomato	cytosol	26.22	27.4
CDY13604	Canola	cytosol	31.89	27.38
VIT_14s0171g00480.t01	Wine grape	cytosol	35.41	27.29
CDY17656	Canola	extracellular	17.03	27.16
CDY49755	Canola	extracellular	17.03	27.16
CDY17657	Canola	cytosol	19.46	27.07
CDX83577	Canola	cytosol	31.35	27.04
CDX99734	Canola	cytosol	28.92	26.88
KRH57627	Soybean	cytosol	34.86	26.06
KRG94336	Soybean	cytosol	33.78	25.51
CDY48808	Canola	cytosol	19.73	24.83
CDY09428	Canola	cytosol	19.73	24.41
Solyc02g093840.2.1	Tomato	cytosol	31.62	23.93
PGSC0003DMT400052249	Potato	cytosol	31.35	23.63
CDY36244	Canola	cytosol	13.51	22.22

Protein Annotations

EnsemblPlants:CDY00160	EnsemblPlantsGene:GSBRNA2T00109677001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	ProteinID:CDY00160
ProteinID:CDY00160.1	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEEAEF	MapMan:35.1	:

Description

BnaC09g01410D

Coordinates

chrLK031916:+:1115967..1117151

Molecular Weight (calculated)

40759.4 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.194

Length

370 amino acids

Sequence
(BLAST)

001: MEISCGALGD VDRLREDDLF KTVSFSGYQT IVSWAWDGGD SSNGLFSDLL SFGEEINALA ASLPEDPFSM NIRSTLNSLG EEAATLPNDP FCMTLKDHKV
101: SVLGGGGGEE PHSAFDLVLP YLEMRDAFAV ESVCRSLRDS VRKESCLWTT VDLSDDSLLK YRVTDDSLLK LTRRAQGRLR CLNLGGCVGI TDDGLMQVLA
201: SNPRLSKLSV SGCHRLSTVG LLSTLRDLRS SNQLGVKSLV TGGALYFTRE QFNELNLLLG ADGEAGSKSR RRRLYTSCRS DFSLDDDRGT DLEICPWCEK
301: PSLVFDCASE TCPLKDHPCP KQSCRACVVC IERCHDCGSC LNDCEHKPFC FAFSCVICYK KRSNQLQELL

Best Arabidopsis Sequence Match ( AT3G27290.1 )
(BLAST)

001: MEVNYERLRG SYNDYRKLEL GLGEFGDDFV GLPDDPFCMN IRSTLNSISD WFHENQIGLV SEDHTLPEDP FCMRVRSTLN TISDWFHENQ KEIGVVDQML
101: FETLSWFYNN DDDDGDDDDD GGGGGEAHDA FELVLPYLEL KEILAVEVVC RSLRDSVGKE PFFWTSIDLN DSFLQYRVTD ESLLKLTRRA LGGVRCLNLG
201: GCVGITDYGL KQVLASNPHL TKLSVSGCLR LSTAGLVSTL RDLKSSNRLG VKSLITGGAL YFTKEQFKEL NLLLGGDAKV GLQERKKRFY TSCRSEFYLE
301: DDRVTDLEIC PWCEKPSLVF DCPADTCPLK GQYPYSKSSC RACVVCIERC HECGSCLNDC ENKPFCFAFS CVVCIEKRSN RL

Arabidopsis Description

F-box protein At3g27290 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.