CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX90932
CDX96963
CDY01389
CDY08688
CDY13521
CDY14922
CDY18013
CDY21896
CDY22060
CDY29370
CDY39073
CDY43408
CDY44209
CDY47299
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	CDY01389	AT1G20140.1	12795696
AT3G26000.1	CDY29370	AT1G20140.1	12795696
AT3G26000.1	CDY43408	AT1G20140.1	12795696
AT3G26000.1	CDY44209	AT1G20140.1	12795696
AT3G26000.1	CDY63159	AT1G20140.1	12795696
AT3G26000.1	CDY67544	AT1G20140.1	12795696
AT3G26000.1	CDY68971	AT1G20140.1	12795696
AT3G26000.1	CDX68112	AT1G75950.1	12795696
AT3G26000.1	CDX73212	AT1G75950.1	12795696
AT3G26000.1	CDX80590	AT1G75950.1	12795696
AT3G26000.1	CDX85931	AT1G75950.1	12795696
AT3G26000.1	CDX87650	AT1G75950.1	12795696
AT3G26000.1	CDY13521	AT1G75950.1	12795696
AT3G26000.1	CDY39073	AT1G75950.1	12795696
AT3G26000.1	CDX96963	AT2G03170.1	12795696
AT3G26000.1	CDY14922	AT2G03170.1	12795696
AT3G26000.1	CDY01389	AT2G25700.1	12795696
AT3G26000.1	CDY29370	AT2G25700.1	12795696
AT3G26000.1	CDY43408	AT2G25700.1	12795696
AT3G26000.1	CDY44209	AT2G25700.1	12795696
AT3G26000.1	CDY63159	AT2G25700.1	12795696
AT3G26000.1	CDY67544	AT2G25700.1	12795696
AT3G26000.1	CDY68971	AT2G25700.1	12795696
AT3G26000.1	CDY08688	AT3G44260.1	21798944
AT3G26000.1	CDY47299	AT3G44260.1	21798944
AT3G26000.1	CDX90932	AT4G02570.1	12795696
AT3G26000.1	CDY18013	AT4G02570.1	12795696
AT3G26000.1	CDY21896	AT4G02570.1	12795696
AT3G26000.1	CDY22060	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017339.1-P	Field mustard	cytosol	95.43	96.41
CDY04188	Canola	cytosol	94.16	95.13
CDY13604	Canola	cytosol	81.22	74.25
CDX83577	Canola	cytosol	79.44	72.96
CDX99734	Canola	cytosol	72.59	71.86
CDY40985	Canola	cytosol	68.02	68.19
AT3G26000.1	Thale cress	cytosol	70.3	61.15
KRH42623	Soybean	cytosol	53.3	46.56
KRH58731	Soybean	cytosol	54.31	46.22
VIT_01s0010g02380.t01	Wine grape	cytosol	53.55	43.96
PGSC0003DMT400041014	Potato	cytosol, plastid	47.97	39.38
Solyc04g024940.2.1	Tomato	cytosol, plastid	47.21	38.75
GSMUA_Achr3P02640_001	Banana	cytosol	35.79	34.99
PGSC0003DMT400041013	Potato	cytosol, plastid	28.43	34.36
GSMUA_Achr2P20980_001	Banana	cytosol	39.09	32.49
CDY00160	Canola	cytosol	29.7	31.62
Os04t0485800-01	Rice	cytosol, extracellular	36.04	31.35
CDY20054	Canola	cytosol	30.2	31.15
CDY17657	Canola	cytosol	20.56	30.45
Zm00001d003250_P001	Maize	cytosol	35.03	30.2
EES12408	Sorghum	cytosol	34.52	29.76
Zm00001d025717_P001	Maize	cytosol	34.52	28.1
CDY49755	Canola	extracellular	16.24	27.59
CDY17656	Canola	extracellular	16.24	27.59
CDY09428	Canola	cytosol	19.04	25.08
CDY36244	Canola	cytosol	14.21	24.89
CDY48808	Canola	cytosol	18.02	24.15
TraesCS2B01G363000.1	Wheat	nucleus	31.73	23.86
TraesCS2A01G320200.1	Wheat	nucleus	32.74	22.4
TraesCS2D01G343000.1	Wheat	nucleus	32.74	22.32
HORVU2Hr1G083980.2	Barley	nucleus	29.95	19.22

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078HNL2	EnsemblPlants:CDY39176	ProteinID:CDY39176	ProteinID:CDY39176.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067370001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PANTHER:PTHR44838	PANTHER:PTHR44838:SF2
SUPFAM:SSF81383	UniParc:UPI0004EE1E0D	SEG:seg	:	:	:

Description

BnaC09g21680DBnaC09g21680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNL2]

Coordinates

chrLK032442:+:192160..195492

Molecular Weight (calculated)

43934.8 Da

IEP (calculated)

4.486

GRAVY (calculated)

-0.247

Length

394 amino acids

Sequence
(BLAST)

001: MALNFSHRHF SSHLSDESMK IANGNAGDSA SVDILDVLPS DPFGMDINNT FTAITGWLED LEVDCSQYGR DEIWVGDGSH QLFAGLSFIW NNAMRFQEFP
101: ERNVYTNGAF LSTSSVDEVG ESSGRCTTND AVEDAHVHPA FGFCLYRLGV KDLLSASMVC KSLHTTVCDD SLLWKHIHIC QPLNEKITDE ALLQLTERAQ
201: GTMQCLRLVD CSRVTDDCLK QVMERNPQVV KLGVSGCTRI TIDGVLSILR DLKSAGKPQV KQLEIGGIFG VTKDHYDELF GLLDVDNNVE QSTQKPRFYH
301: RGDSSCVSCD DDDRVLDIEM CPKCQNARLV YDCPAEDCKG KEECRACSLC IQRCFQCGRC INDSEYEETF CLEFLCADCS KSSLKLPLEV ENSI

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.