Factsheet for Bra017339.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P
Bra035002.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	Bra012213.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra012214.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra012216.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra025795.1-P	AT1G20140.1	12795696
AT3G26000.1	Bra003735.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra008231.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra015801.1-P	AT1G75950.1	12795696
AT3G26000.1	Bra039504.1-P	AT2G03170.1	12795696
AT3G26000.1	Bra012213.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra012214.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra012216.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra025795.1-P	AT2G25700.1	12795696
AT3G26000.1	Bra035002.1-P	AT3G44260.1	21798944
AT3G26000.1	Bra000874.1-P	AT4G02570.1	12795696
AT3G26000.1	Bra036257.1-P	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39176	Canola	cytosol	96.41	95.43
Bra025177.1-P	Field mustard	cytosol	83.08	75.17
Bra036353.1-P	Field mustard	cytosol	67.95	67.43
AT3G26000.1	Thale cress	cytosol	69.74	60.04
KRH42623	Soybean	cytosol	54.36	47.01
KRH58731	Soybean	cytosol	55.13	46.44
VIT_01s0010g02380.t01	Wine grape	cytosol	54.36	44.17
PGSC0003DMT400041014	Potato	cytosol, plastid	48.21	39.17
Solyc04g024940.2.1	Tomato	cytosol, plastid	47.44	38.54
GSMUA_Achr3P02640_001	Banana	cytosol	36.15	34.99
PGSC0003DMT400041013	Potato	cytosol, plastid	28.72	34.36
GSMUA_Achr2P20980_001	Banana	cytosol	39.49	32.49
Bra039085.1-P	Field mustard	cytosol	30.51	31.65
Os04t0485800-01	Rice	cytosol, extracellular	36.15	31.13
EES12408	Sorghum	cytosol	35.38	30.2
Zm00001d003250_P001	Maize	cytosol	35.38	30.2
Bra024868.1-P	Field mustard	cytosol	22.05	29.86
Bra024867.1-P	Field mustard	extracellular	17.44	29.44
Zm00001d025717_P001	Maize	cytosol	34.87	28.1
Bra026645.1-P	Field mustard	cytosol	18.97	24.75
TraesCS2B01G363000.1	Wheat	nucleus	32.56	24.24
TraesCS2A01G320200.1	Wheat	nucleus	33.59	22.74
TraesCS2D01G343000.1	Wheat	nucleus	33.59	22.66
HORVU2Hr1G083980.2	Barley	nucleus	30.77	19.54

Protein Annotations

EnsemblPlants:Bra017339.1	EnsemblPlants:Bra017339.1-P	EnsemblPlantsGene:Bra017339	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	PFAM:PF00646	SEG:seg	SUPFAM:SSF81383	UniParc:UPI00025421CA
UniProt:M4DLF8	MapMan:35.1	:	:	:	:

Description

AT3G26000 (E=5e-116) | F-box family protein

Coordinates

chrA09:+:14382906..14384151

Molecular Weight (calculated)

43630.4 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.259

Length

390 amino acids

Sequence
(BLAST)

001: MALNFSRRHF SSHLSDESMK IANGYGDSAS VDILDVLPSD PFGMDINNTF TAITGWLEDL EVDCSRYGRD EVWVGDGSHQ LFAGLSFIWN NAMRFQEFPE
101: SNVYTNDAFL STSSVDEVGE SSGRCTTNEN AHVHPAFGFC LYRLGVKDLL SASMVCKSLH TTVCDDSLLW KHIHICQPLN EKITDEALLQ LTERAQGTMQ
201: CLRLVDCSRV TDDCLKRVME RNPQVVKLGV SGCTRITIDG VLSILRDLNS AGNPQVKQLE IGGIFGVTKD HYDELFGLLD VDNNVEQSIQ KPRFYHRGDS
301: SCVSCDDDDT VLDIEMCPKC QNARLVYDCP AEDCKGKEEC RACSLCIQRC FQCGRCINDS EYEETFCLEF LCADCSKQSP KLPLEVENSI

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.