CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX90932
CDX96963
CDY01389
CDY08688
CDY13521
CDY14922
CDY18013
CDY21896
CDY22060
CDY29370
CDY39073
CDY43408
CDY44209
CDY47299
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	CDY01389	AT1G20140.1	12795696
AT3G26000.1	CDY29370	AT1G20140.1	12795696
AT3G26000.1	CDY43408	AT1G20140.1	12795696
AT3G26000.1	CDY44209	AT1G20140.1	12795696
AT3G26000.1	CDY63159	AT1G20140.1	12795696
AT3G26000.1	CDY67544	AT1G20140.1	12795696
AT3G26000.1	CDY68971	AT1G20140.1	12795696
AT3G26000.1	CDX68112	AT1G75950.1	12795696
AT3G26000.1	CDX73212	AT1G75950.1	12795696
AT3G26000.1	CDX80590	AT1G75950.1	12795696
AT3G26000.1	CDX85931	AT1G75950.1	12795696
AT3G26000.1	CDX87650	AT1G75950.1	12795696
AT3G26000.1	CDY13521	AT1G75950.1	12795696
AT3G26000.1	CDY39073	AT1G75950.1	12795696
AT3G26000.1	CDX96963	AT2G03170.1	12795696
AT3G26000.1	CDY14922	AT2G03170.1	12795696
AT3G26000.1	CDY01389	AT2G25700.1	12795696
AT3G26000.1	CDY29370	AT2G25700.1	12795696
AT3G26000.1	CDY43408	AT2G25700.1	12795696
AT3G26000.1	CDY44209	AT2G25700.1	12795696
AT3G26000.1	CDY63159	AT2G25700.1	12795696
AT3G26000.1	CDY67544	AT2G25700.1	12795696
AT3G26000.1	CDY68971	AT2G25700.1	12795696
AT3G26000.1	CDY08688	AT3G44260.1	21798944
AT3G26000.1	CDY47299	AT3G44260.1	21798944
AT3G26000.1	CDX90932	AT4G02570.1	12795696
AT3G26000.1	CDY18013	AT4G02570.1	12795696
AT3G26000.1	CDY21896	AT4G02570.1	12795696
AT3G26000.1	CDY22060	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40985	Canola	cytosol	84.92	86.01
CDY39176	Canola	cytosol	71.86	72.59
CDY04188	Canola	cytosol	70.85	72.31
CDX83577	Canola	cytosol	73.37	68.07
CDY13604	Canola	cytosol	73.12	67.52
AT3G26000.1	Thale cress	cytosol	65.83	57.84
KRH42623	Soybean	cytosol	52.51	46.34
KRH58731	Soybean	cytosol	53.02	45.57
VIT_01s0010g02380.t01	Wine grape	cytosol	51.76	42.92
PGSC0003DMT400041014	Potato	cytosol, plastid	47.74	39.58
Solyc04g024940.2.1	Tomato	cytosol, plastid	45.48	37.71
PGSC0003DMT400041013	Potato	cytosol, plastid	28.39	34.66
GSMUA_Achr3P02640_001	Banana	cytosol	33.92	33.5
GSMUA_Achr2P20980_001	Banana	cytosol	36.93	31.01
Os04t0485800-01	Rice	cytosol, extracellular	34.92	30.68
Zm00001d003250_P001	Maize	cytosol	34.17	29.76
EES12408	Sorghum	cytosol	33.67	29.32
Zm00001d025717_P001	Maize	cytosol	35.43	29.13
CDY17657	Canola	cytosol	19.35	28.95
CDY00160	Canola	cytosol	26.88	28.92
CDY49755	Canola	extracellular	16.83	28.88
CDY17656	Canola	extracellular	16.83	28.88
CDY20054	Canola	cytosol	27.14	28.27
CDY36244	Canola	cytosol	14.82	26.22
CDY09428	Canola	cytosol	19.1	25.42
CDY48808	Canola	cytosol	18.09	24.49
TraesCS2B01G363000.1	Wheat	nucleus	31.66	24.05
TraesCS2A01G320200.1	Wheat	nucleus	32.66	22.57
TraesCS2D01G343000.1	Wheat	nucleus	32.41	22.32
HORVU2Hr1G083980.2	Barley	nucleus	30.4	19.71

Protein Annotations

EnsemblPlants:CDX99734	EnsemblPlantsGene:GSBRNA2T00108359001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838
PANTHER:PTHR44838:SF2	PFAM:PF00646	ProteinID:CDX99734	ProteinID:CDX99734.1	SUPFAM:SSF81383	UniParc:UPI0004EE39C5
MapMan:35.1	:	:	:	:	:

Description

BnaC02g35860D

Coordinates

chrLK031913:+:552964..554927

Molecular Weight (calculated)

44537.1 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.239

Length

398 amino acids

Sequence
(BLAST)

001: MALNFSHRHV SEKPMKIADG YLKGDCFDYG MSTGGPASGD IVDVLPSDPF GMDMNNTFTA ITGWLEDLEF DYSRYGRDEI GDGDHQLFAG LSFIWNNAMR
101: FQEFPESHWF EEGFDGDGSC AGSFVSPTSV DKVMSRVGES SDGGENANVH PALGFCLYHL GVKDLLSVSM VCKSLHTTVC DDSLLWKHIH ISQPLNEKIN
201: DESLLRLTER AHGTMQCLRL VDCSKITEDC LRKVLERNPQ VVKLGVPGCT RISIDGLVSI LRDLKSSGKL KVKHLESGGL YGVTKDHYDE LLDLLDIGNN
301: VEQTIQKPRY YHRGYTFASC DDVVRALDIE MCRKCQNWRI VYDCPAEDCK GEEECRACSL CVQRCVQCGR CINGVYEETF CLEFLCSGCS KLLKFPLV

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.