Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19964 | Canola | cytosol | 97.37 | 97.37 |
| CDY48737 | Canola | cytosol | 92.11 | 89.74 |
| CDY05699 | Canola | cytosol | 90.79 | 88.46 |
| CDY54510 | Canola | cytosol | 86.18 | 85.62 |
| AT5G48170.1 | Thale cress | cytosol | 88.16 | 85.35 |
| CDX86323 | Canola | cytosol | 85.53 | 84.97 |
| KRH14138 | Soybean | nucleus | 52.63 | 51.95 |
| Solyc05g040040.1.1 | Tomato | cytosol | 50.66 | 50.66 |
| PGSC0003DMT400048479 | Potato | cytosol | 50.66 | 50.66 |
| KRH73996 | Soybean | cytosol | 50.66 | 50.0 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 53.29 | 47.65 |
| PGSC0003DMT400015675 | Potato | cytosol | 51.32 | 47.56 |
| Solyc07g047680.1.1 | Tomato | cytosol | 51.32 | 46.71 |
| Zm00001d028159_P001 | Maize | cytosol | 47.37 | 40.45 |
| Zm00001d048185_P001 | Maize | cytosol | 47.37 | 40.0 |
| Os03t0196500-00 | Rice | cytosol | 46.05 | 39.33 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 48.03 | 39.25 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 46.05 | 38.67 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 46.05 | 38.46 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 46.71 | 38.38 |
| OQU93068 | Sorghum | cytosol | 46.71 | 35.32 |
| CDY34266 | Canola | nucleus | 23.68 | 24.66 |
| CDY03475 | Canola | nucleus | 23.68 | 24.66 |
Protein Annotations
| EnsemblPlants:CDY00072 | EnsemblPlantsGene:GSBRNA2T00109565001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 |
| ProteinID:CDY00072 | ProteinID:CDY00072.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0004EE891F | MapMan:11.6.2.3 |
| MapMan:19.2.2.8.1.4.1 | : | : | : | : | : |
Description
BnaC09g02290D
Coordinates
chrLK031916:+:585081..585539
Molecular Weight (calculated)
17514.6 Da
IEP (calculated)
10.146
GRAVY (calculated)
0.023
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKRIGMVE KSNNKRQRVN LVPEFSINDH HDVLVEILRR LDGPSLGSAA CVCRLWSAVA RNDSIWEEFC FRQVSPRPSL SIRSVVSALG GYRRLYFLCI
101: RPFLARLPKI LWSQDQLQLS LSLYCVHYYE RIYVGAAPPS SLMFLRMPVN VV
101: RPFLARLPKI LWSQDQLQLS LSLYCVHYYE RIYVGAAPPS SLMFLRMPVN VV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.