Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54510 | Canola | cytosol | 97.39 | 97.39 |
| Bra037508.1-P | Field mustard | cytosol | 99.35 | 96.82 |
| CDY48737 | Canola | cytosol | 88.89 | 87.18 |
| CDY05699 | Canola | cytosol | 88.24 | 86.54 |
| CDY00072 | Canola | cytosol | 84.97 | 85.53 |
| CDY19964 | Canola | cytosol | 84.97 | 85.53 |
| AT5G48170.1 | Thale cress | cytosol | 85.62 | 83.44 |
| KRH14138 | Soybean | nucleus | 54.9 | 54.55 |
| KRH73996 | Soybean | cytosol | 52.94 | 52.6 |
| Solyc05g040040.1.1 | Tomato | cytosol | 50.98 | 51.32 |
| PGSC0003DMT400048479 | Potato | cytosol | 50.98 | 51.32 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 55.56 | 50.0 |
| PGSC0003DMT400015675 | Potato | cytosol | 52.29 | 48.78 |
| Solyc07g047680.1.1 | Tomato | cytosol | 52.29 | 47.9 |
| Zm00001d028159_P001 | Maize | cytosol | 49.67 | 42.7 |
| Zm00001d048185_P001 | Maize | cytosol | 49.67 | 42.22 |
| Os03t0196500-00 | Rice | cytosol | 47.71 | 41.01 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 47.71 | 40.33 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 47.71 | 40.11 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 48.37 | 40.0 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 48.37 | 39.78 |
| OQU93068 | Sorghum | cytosol | 48.37 | 36.82 |
| CDY34266 | Canola | nucleus | 23.53 | 24.66 |
| CDY03475 | Canola | nucleus | 23.53 | 24.66 |
Protein Annotations
| EnsemblPlants:CDX86323 | EnsemblPlantsGene:GSBRNA2T00144443001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 |
| ProteinID:CDX86323 | ProteinID:CDX86323.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EE0F60 | MapMan:11.6.2.3 |
| MapMan:19.2.2.8.1.4.1 | : | : | : | : | : |
Description
BnaA06g30400D
Coordinates
chrLK031845:+:936857..937318
Molecular Weight (calculated)
17633.5 Da
IEP (calculated)
9.303
GRAVY (calculated)
-0.084
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEKNNNKRQ RAKLVPEFSI NDHQDVLVEI LRRLDGPSLC SAACVCRLWS AVARNDSIWE ELCFRQVSPR PSLPLRSVVS ALGGYRRLYF LCIRPVLSRL
101: PKIIWSHDQL QLSLSLYCVH YYERLYVGAW HEDAPPSAPP SSLMFLRKPV NVV
101: PKIIWSHDQL QLSLSLYCVH YYERLYVGAW HEDAPPSAPP SSLMFLRKPV NVV
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.