Factsheet for Bra037508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 2
cytosol 2
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48170.1	Bra012213.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra012214.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra012216.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra025795.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra003735.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra008231.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra015801.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra012213.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra012214.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra012216.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra025795.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra014159.1-P	AT3G60010.1	15161962
AT5G48170.1	Bra018756.1-P	AT3G60010.1	15161962
AT5G48170.1	Bra018757.1-P	AT3G60010.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86323	Canola	cytosol	96.82	99.35
Bra020714.1-P	Field mustard	cytosol	87.9	88.46
Bra036183.1-P	Field mustard	cytosol	82.8	85.53
AT5G48170.1	Thale cress	cytosol	84.08	84.08
KRH14138	Soybean	nucleus	53.5	54.55
KRH73996	Soybean	cytosol	51.59	52.6
PGSC0003DMT400048479	Potato	cytosol	49.68	51.32
Solyc05g040040.1.1	Tomato	cytosol	49.68	51.32
VIT_12s0057g00720.t01	Wine grape	cytosol	54.14	50.0
PGSC0003DMT400015675	Potato	cytosol	50.96	48.78
Solyc07g047680.1.1	Tomato	cytosol	50.96	47.9
Zm00001d028159_P001	Maize	cytosol	49.04	43.26
Zm00001d048185_P001	Maize	cytosol	49.04	42.78
Os03t0196500-00	Rice	cytosol	46.5	41.01
TraesCS4D01G263600.1	Wheat	cytosol	46.5	40.33
TraesCS4B01G263400.1	Wheat	cytosol	46.5	40.11
TraesCS4A01G042900.1	Wheat	cytosol	47.13	40.0
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	47.13	39.78
OQU93068	Sorghum	cytosol	47.13	36.82
Bra013776.1-P	Field mustard	nucleus	22.93	24.66

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	EnsemblPlantsGene:Bra037508	EnsemblPlants:Bra037508.1	EnsemblPlants:Bra037508.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
UniProt:M4F8U6	PFAM:PF12937	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI000253F8BB	SEG:seg	:	:	:	:

Description

AT5G48170 (E=1e-065) SLY2 | SLY2 (SLEEPY2)

Coordinates

chrA06:-:21138324..21138797

Molecular Weight (calculated)

18014.0 Da

IEP (calculated)

9.303

GRAVY (calculated)

-0.080

Length

157 amino acids

Sequence
(BLAST)

001: MVEKNNNKRQ RVKLVPEFSI NDHQDVLVEI LRRLDGPSLC SAACVCRLWS AVARNDSIWE ELCFRQVSPR PSLPLRSVVS ALGGYRRLYF LCIRPVLSRL
101: PKIIWSHDQL QLSLSLYCVH YYERLYVGAW HEDAPPSAPP SAPPSSLMFL RKPVNVV

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.