Factsheet for Bra014159.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003700.1-P
Bra004092.1-P
Bra004220.1-P
Bra007086.1-P
Bra008345.1-P
Bra011854.1-P
Bra011856.1-P
Bra013776.1-P
Bra014802.1-P
Bra015474.1-P
Bra015630.1-P
Bra020625.1-P
Bra020714.1-P
Bra030639.1-P
Bra033585.1-P
Bra033628.1-P
Bra034004.1-P
Bra034254.1-P
Bra036183.1-P
Bra036257.1-P
Bra036266.1-P
Bra037508.1-P
Bra038977.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60010.1	Bra015474.1-P	AT1G06110.1	12169662
AT3G60010.1	Bra030639.1-P	AT1G06110.1	12169662
AT3G60010.1	Bra038977.1-P	AT1G55000.1	12169662
AT3G60010.1	Bra004092.1-P	AT1G67340.1	12169662
AT3G60010.1	Bra004220.1-P	AT1G67340.1	12169662
AT3G60010.1	Bra034004.1-P	AT1G67340.1	12169662
AT3G60010.1	Bra003700.1-P	AT1G76920.1	12169662
AT3G60010.1	Bra008345.1-P	AT1G78100.1	12169662
AT3G60010.1	Bra015630.1-P	AT1G78100.1	12169662
AT3G60010.1	Bra034254.1-P	AT2G25490.1	12169662
AT3G60010.1	Bra007086.1-P	AT3G54650.1	19277118
AT3G60010.1	Bra014802.1-P	AT3G54650.1	19277118
AT3G60010.1	Bra036266.1-P	AT4G02440.1	16412087
AT3G60010.1	Bra000874.1-P	AT4G02570.1	16412087
AT3G60010.1	Bra036257.1-P	AT4G02570.1	16412087
AT3G60010.1	Bra013776.1-P	AT4G24210.1	15161962
AT3G60010.1	Bra033585.1-P	AT4G38940.1	12169662
AT3G60010.1	Bra011854.1-P	AT4G39550.1	14749489
AT3G60010.1	Bra011856.1-P	AT4G39550.1	14749489
AT3G60010.1	Bra033628.1-P	AT4G39550.1	14749489
AT3G60010.1	Bra020714.1-P	AT5G48170.1	15161962
AT3G60010.1	Bra036183.1-P	AT5G48170.1	15161962
AT3G60010.1	Bra037508.1-P	AT5G48170.1	15161962
AT3G60010.1	Bra020625.1-P	AT5G49610.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16470	Canola	cytosol	98.74	98.74
Bra018757.1-P	Field mustard	cytosol	66.04	65.62
Bra018756.1-P	Field mustard	cytosol	62.89	64.1
Bra008231.1-P	Field mustard	cytosol	62.89	62.5
Bra003735.1-P	Field mustard	cytosol	62.26	61.88
Bra015801.1-P	Field mustard	cytosol	61.64	60.87
AT3G60010.1	Thale cress	cytosol	58.49	60.39
Bra025795.1-P	Field mustard	cytosol	55.97	55.28
Bra014519.1-P	Field mustard	cytosol	53.46	53.46
Bra012214.1-P	Field mustard	cytosol	42.77	50.75
Bra017397.1-P	Field mustard	cytosol	49.69	49.69
Bra012213.1-P	Field mustard	cytosol	47.17	49.34
Bra039504.1-P	Field mustard	cytosol	52.2	49.11
Bra012216.1-P	Field mustard	cytosol	48.43	48.12

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra014159	EnsemblPlants:Bra014159.1	EnsemblPlants:Bra014159.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4DCE5
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000254654E	SEG:seg	:	:

Description

AT1G75950 (E=4e-043) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA08:+:2947861..2948340

Molecular Weight (calculated)

18064.3 Da

IEP (calculated)

3.849

GRAVY (calculated)

-0.143

Length

159 amino acids

Sequence
(BLAST)

001: MSTFKIITLK SCDDKIFEVE EAVAVQSQMI AHMVEDDCVD GEIPISNVTG AILAKVIEYC EKHLVNPDVD GDSSSSTEDE LKNWDAEFMK NMDREMLFAL
101: IMAANYLNTK DLLDLICQTI ADMIKGFSVD EVRTFFNIQN DFTPEEEAEI RAETEWAFE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.