Factsheet for Bra033585.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38940.1	Bra039504.1-P	AT1G10230.1	12169662
AT4G38940.1	Bra003735.1-P	AT1G75950.1	12169662
AT4G38940.1	Bra008231.1-P	AT1G75950.1	12169662
AT4G38940.1	Bra015801.1-P	AT1G75950.1	12169662
AT4G38940.1	Bra014159.1-P	AT3G60010.1	12169662
AT4G38940.1	Bra018756.1-P	AT3G60010.1	12169662
AT4G38940.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22405	Canola	cytosol, plastid	97.52	97.52
AT4G38940.1	Thale cress	cytosol	67.22	65.95
Bra000669.1-P	Field mustard	cytosol	17.63	43.84
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	42.42	43.26
Bra005410.1-P	Field mustard	cytosol	42.7	43.18
Bra001029.1-P	Field mustard	cytosol	41.32	42.61
Bra021684.1-P	Field mustard	cytosol	40.77	42.53
Bra021607.1-P	Field mustard	cytosol	40.5	42.36
Bra022777.1-P	Field mustard	cytosol	41.05	42.21
Bra021683.1-P	Field mustard	mitochondrion	42.7	41.11
Bra004072.1-P	Field mustard	cytosol, plastid	41.05	40.82
Bra022778.1-P	Field mustard	cytosol	39.67	40.56
Bra000668.1-P	Field mustard	cytosol	36.91	40.36
Bra022791.1-P	Field mustard	cytosol	38.57	40.35
Bra004774.1-P	Field mustard	cytosol	39.12	40.11
Bra020387.1-P	Field mustard	cytosol	40.77	40.11
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	39.94	40.06
Bra039467.1-P	Field mustard	cytosol	38.84	39.94
Bra005142.1-P	Field mustard	cytosol	38.29	39.94
Bra000665.1-P	Field mustard	cytosol	39.94	39.51
Bra021610.1-P	Field mustard	cytosol	38.29	39.04
Bra005412.1-P	Field mustard	cytosol	38.57	39.0
Bra033997.1-P	Field mustard	cytosol	24.79	38.79
Bra022790.1-P	Field mustard	plasma membrane	34.16	38.75
Bra021609.1-P	Field mustard	cytosol	38.02	38.33
Bra016843.1-P	Field mustard	cytosol	36.36	37.93
Bra022024.1-P	Field mustard	cytosol	16.25	37.11
Bra010511.1-P	Field mustard	cytosol	18.73	36.56
Bra021608.1-P	Field mustard	cytosol	33.33	35.8
Bra005411.1-P	Field mustard	cytosol	42.98	28.01

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra033585	EnsemblPlants:Bra033585.1	EnsemblPlants:Bra033585.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	UniProt:M4EXP8	PFAM:PF00646
PFAM:PF07646	PFAM:PF13964	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253F8F4	SEG:seg	:

Description

AT4G38940 (E=1e-141) | kelch repeat-containing F-box family protein

Coordinates

chrA06:-:26107245..26108336

Molecular Weight (calculated)

40431.7 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.089

Length

363 amino acids

Sequence
(BLAST)

001: MSSSETRAQK KQPPSPISSL PEEIFVDIVA RVSRSYYPTL SQVSRRFRSL VASPELYARR SVLRRTEQCI YVAISKDQTS DIHWFTLCIK PNGGGGTSDH
101: RLVHIPSLPP MPLQGSYVAV GSSIFVMGGF QDWSITSSVS LIDCRSHTAQ PLADMPKAVA GSVAQVIDGK IYVIGGANGH SPMKSRSRTM MEFDIETEVW
201: KLKSRLDWEQ GKVWFSSVAM GGKIYMRTCY NSFVCDPVTS PDHFVKDEVL HSKEWLGSCV VEDVLFYYDV RGKCLRAYDP KLRSWGVVNG LEGLLPRGCS
301: WSKAASYGGG KMVLFMQTEE IWCAEIAVER RQGGDIWGTV EWCEVVLGGN FRIMDCVPVA VLL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.