Factsheet for Bra021683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72582	Canola	mitochondrion	97.61	97.61
CDX97775	Canola	mitochondrion	97.35	97.35
Bra021684.1-P	Field mustard	cytosol	57.29	62.07
Bra022777.1-P	Field mustard	cytosol	49.6	52.97
Bra005410.1-P	Field mustard	cytosol	47.75	50.14
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	47.21	50.0
Bra022778.1-P	Field mustard	cytosol	46.95	49.86
Bra004072.1-P	Field mustard	cytosol, plastid	45.89	47.4
Bra021607.1-P	Field mustard	cytosol	43.5	47.26
Bra000669.1-P	Field mustard	cytosol	18.3	47.26
Bra022024.1-P	Field mustard	cytosol	19.89	47.17
Bra022790.1-P	Field mustard	plasma membrane	39.52	46.56
Bra033997.1-P	Field mustard	cytosol	28.38	46.12
Bra022791.1-P	Field mustard	cytosol	41.91	45.53
Bra021609.1-P	Field mustard	cytosol	42.18	44.17
Bra004774.1-P	Field mustard	cytosol	41.38	44.07
Bra005412.1-P	Field mustard	cytosol	41.91	44.01
Bra039467.1-P	Field mustard	cytosol	40.85	43.63
Bra000665.1-P	Field mustard	cytosol	41.91	43.05
Bra033585.1-P	Field mustard	cytosol, plastid	41.11	42.7
Bra021610.1-P	Field mustard	cytosol	40.32	42.7
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	40.58	42.27
Bra005142.1-P	Field mustard	cytosol	38.99	42.24
Bra000668.1-P	Field mustard	cytosol	36.87	41.87
Bra020387.1-P	Field mustard	cytosol	40.58	41.46
Bra021608.1-P	Field mustard	cytosol	37.14	41.42
Bra010511.1-P	Field mustard	cytosol	20.42	41.4
Bra016843.1-P	Field mustard	cytosol	38.2	41.38
Bra001029.1-P	Field mustard	cytosol	32.36	34.66
Bra005411.1-P	Field mustard	cytosol	45.36	30.7

Protein Annotations

EnsemblPlants:Bra021683.1	EnsemblPlants:Bra021683.1-P	EnsemblPlantsGene:Bra021683	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00025449A4	UniProt:M4DYT7	MapMan:35.1	:

Description

AT4G38940 (E=1e-061) | kelch repeat-containing F-box family protein

Coordinates

chrA04:+:13842766..13843899

Molecular Weight (calculated)

43020.3 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.381

Length

377 amino acids

Sequence
(BLAST)

001: MLRRGFLLRS KTSSKTVAPK EVPPSEPPFL TTTSLPHDIV VNILARVSRS HYPKLSLVSK YFRTIVRSRE VYARRSSLGC TEHCLYLILY NLRTKENRCY
101: ILLRGTTNGS HPRLVLVPSL PVLPSRPYPS SFAAVGSKIY MFGDGNDGST ALSIDFESHT VRSLPSMPAP LVYTVANVID GRIYAIGRDD RDLDKMMVVV
201: FNTETQTWEP EKTTADVEAG DMYHGSVVMA GKMYTKDFDS SYVYDPKERK WGTDEVMNSK EWRYGCVVDD VLYYYECEED CEKELRGFDR KERCWRVVKG
301: LEGLLHETRS SLWSQTGSYG GNLALFFPKG DERRGEEIWC AEISLERRQG GEIWGKVEWC NRLVTGFQLT ESLDVVV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.