Factsheet for Bra021607.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29702	Canola	cytosol	99.42	99.42
Bra022024.1-P	Field mustard	cytosol	22.77	49.69
Bra021684.1-P	Field mustard	cytosol	47.55	47.41
Bra022777.1-P	Field mustard	cytosol	47.84	47.03
Bra021609.1-P	Field mustard	cytosol	48.7	46.94
Bra021610.1-P	Field mustard	cytosol	47.55	46.35
Bra005410.1-P	Field mustard	cytosol	47.55	45.96
Bra033997.1-P	Field mustard	cytosol	30.26	45.26
Bra000669.1-P	Field mustard	cytosol	19.02	45.21
Bra004072.1-P	Field mustard	cytosol, plastid	47.26	44.93
Bra022778.1-P	Field mustard	cytosol	45.53	44.51
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	44.67	43.54
Bra021683.1-P	Field mustard	mitochondrion	47.26	43.5
Bra022790.1-P	Field mustard	plasma membrane	38.62	41.88
Bra005412.1-P	Field mustard	cytosol	43.23	41.78
Bra022791.1-P	Field mustard	cytosol	41.5	41.5
Bra021608.1-P	Field mustard	cytosol	40.35	41.42
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	42.65	40.88
Bra033585.1-P	Field mustard	cytosol, plastid	42.36	40.5
Bra005142.1-P	Field mustard	cytosol	40.06	39.94
Bra004774.1-P	Field mustard	cytosol	38.9	38.14
Bra000668.1-P	Field mustard	cytosol	36.31	37.95
Bra039467.1-P	Field mustard	cytosol	38.33	37.68
Bra020387.1-P	Field mustard	cytosol	40.06	37.67
Bra016843.1-P	Field mustard	cytosol	37.46	37.36
Bra001029.1-P	Field mustard	cytosol	37.46	36.93
Bra000665.1-P	Field mustard	cytosol	38.9	36.78
Bra010511.1-P	Field mustard	cytosol	19.02	35.48
Bra005411.1-P	Field mustard	cytosol	47.84	29.8

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra021607	EnsemblPlants:Bra021607.1	EnsemblPlants:Bra021607.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4DYL1	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002544422
SEG:seg	:	:	:	:	:

Description

AT2G21950 (E=2e-043) SKIP6 | SKIP6 (SKP1 interacting partner 6); ubiquitin-protein ligase

Coordinates

chrA04:+:13382653..13388327

Molecular Weight (calculated)

40408.6 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.170

Length

347 amino acids

Sequence
(BLAST)

001: MTNEPPSLIT SLPDDIVLDI LARVPRWDYP TLSLVSQHFQ SLVVSPEIYS RRSLLRCTEN FLYVLVLSKR GYCLYILHRK AFVHISSLSD IPYCESFVAV
101: GSRIYMFGGV VGVSSNAFSI DCRSHTVKPL PHMPICLAHT VAGFMDEKIY VFGQCSMKSM VMVVFNTKTH MWEPGLIKPD ISPETWEFGS MVVMADKIYI
201: RSNPSSFIYA PKESKWETDE MLNSKNWDND SCVVDDVLYY YDSYEDRLRA YDPKQKCWGV VKGLDEELFD EIRRGPYWPY TACFGRNLLL YFYKRYQEPR
301: SRTPSKIWWA EISLERRQGG EIWGKVEWCD RVLYEQSEFA MPVSVMV

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.