Factsheet for Bra033997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12648	Canola	cytosol	47.84	88.1
Bra022024.1-P	Field mustard	cytosol	29.31	42.77
Bra000669.1-P	Field mustard	cytosol	26.72	42.47
Bra010511.1-P	Field mustard	cytosol	28.45	35.48
Bra021607.1-P	Field mustard	cytosol	45.26	30.26
Bra022777.1-P	Field mustard	cytosol	45.26	29.75
Bra021684.1-P	Field mustard	cytosol	43.97	29.31
Bra022778.1-P	Field mustard	cytosol	44.83	29.3
Bra005410.1-P	Field mustard	cytosol	44.83	28.97
Bra022791.1-P	Field mustard	cytosol	43.1	28.82
Bra021683.1-P	Field mustard	mitochondrion	46.12	28.38
Bra021609.1-P	Field mustard	cytosol	43.97	28.33
Bra039467.1-P	Field mustard	cytosol	43.1	28.33
Bra021610.1-P	Field mustard	cytosol	43.1	28.09
Bra004072.1-P	Field mustard	cytosol, plastid	43.53	27.67
Bra005142.1-P	Field mustard	cytosol	41.38	27.59
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	42.24	27.53
Bra004774.1-P	Field mustard	cytosol	41.38	27.12
Bra022790.1-P	Field mustard	plasma membrane	37.07	26.88
Bra021608.1-P	Field mustard	cytosol	38.79	26.63
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	40.95	26.24
Bra020387.1-P	Field mustard	cytosol	41.38	26.02
Bra005412.1-P	Field mustard	cytosol	40.09	25.91
Bra000668.1-P	Field mustard	cytosol	36.64	25.6
Bra016843.1-P	Field mustard	cytosol	38.36	25.57
Bra000665.1-P	Field mustard	cytosol	39.66	25.07
Bra033585.1-P	Field mustard	cytosol, plastid	38.79	24.79
Bra001029.1-P	Field mustard	cytosol	29.74	19.6
Bra005411.1-P	Field mustard	cytosol	43.97	18.31

Protein Annotations

EnsemblPlants:Bra033997.1	EnsemblPlants:Bra033997.1-P	EnsemblPlantsGene:Bra033997	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SUPFAM:SSF117281
UniParc:UPI0002545F17	UniProt:M4EYV5	MapMan:35.1	:	:	:

Description

AT4G38940 (E=7e-041) | kelch repeat-containing F-box family protein

Coordinates

chrA02:+:10347195..10347893

Molecular Weight (calculated)

26951.8 Da

IEP (calculated)

5.020

GRAVY (calculated)

-0.026

Length

232 amino acids

Sequence
(BLAST)

001: MTSTAYSIDC RSHTVQPLPS MPHLFRFETV ADIIDDKIYV IGRNYLKEIT VVVVVFNTKT QMWEPGMTIL DKPVGSVIGI RYGCVVMANK IYGMDFVYDP
101: NETKWETPDE TLSSKKWYHA CFIDDVMYYY DLVENKLIAY DSKKRCWKAV EGLEELLAVI RVRKLFKTLR YGERLLFLFS IEETIGVAEE ICCAEISMER
201: RQGGQIFGKV EWFDRDLITG NFDVIKPLDV ML

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.