Factsheet for Bra000665.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90706	Canola	cytosol	98.37	98.37
Bra016843.1-P	Field mustard	cytosol	64.03	67.53
Bra004774.1-P	Field mustard	cytosol	63.22	65.54
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	63.76	64.64
Bra039467.1-P	Field mustard	cytosol	61.31	63.74
Bra000668.1-P	Field mustard	cytosol	57.49	63.55
Bra020387.1-P	Field mustard	cytosol	62.13	61.79
Bra000669.1-P	Field mustard	cytosol	24.25	60.96
Bra010511.1-P	Field mustard	cytosol	25.89	51.08
Bra022791.1-P	Field mustard	cytosol	40.6	42.94
Bra022777.1-P	Field mustard	cytosol	40.87	42.49
Bra021684.1-P	Field mustard	cytosol	40.05	42.24
Bra022024.1-P	Field mustard	cytosol	18.26	42.14
Bra021683.1-P	Field mustard	mitochondrion	43.05	41.91
Bra005410.1-P	Field mustard	cytosol	40.6	41.5
Bra022778.1-P	Field mustard	cytosol	40.05	41.41
Bra004072.1-P	Field mustard	cytosol, plastid	40.05	40.27
Bra033585.1-P	Field mustard	cytosol, plastid	39.51	39.94
Bra033997.1-P	Field mustard	cytosol	25.07	39.66
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	38.15	39.33
Bra022790.1-P	Field mustard	plasma membrane	34.06	39.06
Bra021607.1-P	Field mustard	cytosol	36.78	38.9
Bra021610.1-P	Field mustard	cytosol	37.33	38.48
Bra005412.1-P	Field mustard	cytosol	37.6	38.44
Bra021609.1-P	Field mustard	cytosol	37.06	37.78
Bra005142.1-P	Field mustard	cytosol	35.69	37.64
Bra021608.1-P	Field mustard	cytosol	33.24	36.09
Bra001029.1-P	Field mustard	cytosol	33.24	34.66
Bra005411.1-P	Field mustard	cytosol	41.69	27.47

Protein Annotations

EnsemblPlants:Bra000665.1	EnsemblPlants:Bra000665.1-P	EnsemblPlantsGene:Bra000665	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254027D	UniProt:M4C8Y7	MapMan:35.1	:

Description

AT4G38940 (E=5e-064) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:12359558..12360661

Molecular Weight (calculated)

41550.3 Da

IEP (calculated)

8.080

GRAVY (calculated)

-0.133

Length

367 amino acids

Sequence
(BLAST)

001: MSENMKQSPE MLLSPLIPSL PDDVTIDIVA RVPRSHYPTL SLVSKSFMNL IASSKLYKRR SQLGITQRRL YAVLRNRNTG EFSFYVLHRK LNGYNRLVVV
101: RSLPFMSSRG SCVSVGSKVY VFNDLSVLSF DCTTHTVQRG PNFPQRMSYK EVNVIGKKVY VIGDAFCHYV QGTGWMKVWQ KAVTVFDTET ESLEPKLVHE
201: DMAVGVGPFW SDSVVLEDKI YLKGCMNGNS FVYGPEEREW ELMDEVMNSK AWEGACVVDG VLYYHDRSGK VLRAYDPKQG CWSVVSGLEE FLAVETGRSR
301: LSITVNYGAE KLALFFPKKQ YGEKMICCAE IGLERRQGGE IWGKVQWCHI VIGEGPFDMV ECVSVTV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.