Factsheet for Bra000668.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90709	Canola	cytosol	97.89	96.44
Bra039467.1-P	Field mustard	cytosol	70.78	66.57
Bra004774.1-P	Field mustard	cytosol	67.77	63.56
Bra020387.1-P	Field mustard	cytosol	67.77	60.98
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	63.55	58.29
Bra000665.1-P	Field mustard	cytosol	63.55	57.49
Bra016843.1-P	Field mustard	cytosol	59.34	56.61
Bra000669.1-P	Field mustard	cytosol	21.39	48.63
Bra010511.1-P	Field mustard	cytosol	25.3	45.16
Bra005410.1-P	Field mustard	cytosol	42.47	39.28
Bra022791.1-P	Field mustard	cytosol	40.66	38.9
Bra022777.1-P	Field mustard	cytosol	40.96	38.53
Bra021684.1-P	Field mustard	cytosol	40.36	38.51
Bra022024.1-P	Field mustard	cytosol	18.07	37.74
Bra022790.1-P	Field mustard	plasma membrane	35.84	37.19
Bra022778.1-P	Field mustard	cytosol	39.76	37.18
Bra033585.1-P	Field mustard	cytosol, plastid	40.36	36.91
Bra021683.1-P	Field mustard	mitochondrion	41.87	36.87
Bra033997.1-P	Field mustard	cytosol	25.6	36.64
Bra005412.1-P	Field mustard	cytosol	39.46	36.49
Bra021609.1-P	Field mustard	cytosol	39.46	36.39
Bra021607.1-P	Field mustard	cytosol	37.95	36.31
Bra004072.1-P	Field mustard	cytosol, plastid	38.86	35.34
Bra021610.1-P	Field mustard	cytosol	37.65	35.11
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	37.35	34.83
Bra005142.1-P	Field mustard	cytosol	36.45	34.77
Bra021608.1-P	Field mustard	cytosol	35.24	34.62
Bra001029.1-P	Field mustard	cytosol	34.04	32.1
Bra005411.1-P	Field mustard	cytosol	41.87	24.96

Protein Annotations

EnsemblPlants:Bra000668.1	EnsemblPlants:Bra000668.1-P	EnsemblPlantsGene:Bra000668	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_2	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF07646	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002540280	UniProt:M4C8Z0	MapMan:35.1	:

Description

AT4G38940 (E=1e-055) | kelch repeat-containing F-box family protein

Coordinates

chrA03:-:12373413..12374487

Molecular Weight (calculated)

38092.7 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.230

Length

332 amino acids

Sequence
(BLAST)

001: MEQPLSPSLP DDVIIDIVAR VPRSYYPTLS LVSKSFRKLI ASPTFYKGRS FLGITKHRIY AVLRSRKTRD DFSFYILHRK LKCSNRLVIV GSRTLHHMCS
101: RGSYVSVGSK VYGFNDLHAL SIDCTSHTSQ PISDIPQLMT NKVANVIDKK IYLIGGSFLP DESGSREAWK NAVTVFDTET QSWECKLVKE DMHVGLGPFW
201: SDSMVMEGKI YLKDYSHSNF FAYEPEERKW ELMDKVLNYH KWVGACVVDD VLYYHDCFDM VLKAYDPKQR CWSVVNGLKD FLAVETAHSV RSESEIALER
301: RQGGEIWGHK ESCDVVFEDG MFDMVKFVSV TV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.