CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000668.1-P	Field mustard	cytosol	96.44	97.89
CDY05043	Canola	cytosol	90.8	84.76
CDY05039	Canola	cytosol, nucleus, plastid	90.21	84.21
CDY41929	Canola	cytosol	38.87	69.31
CDY27802	Canola	cytosol	69.44	65.55
CDX79811	Canola	cytosol	68.84	65.54
CDY05037	Canola	nucleus	13.95	65.28
CDY41927	Canola	cytosol	68.55	64.53
CDY69309	Canola	cytosol	70.33	64.23
CDY41928	Canola	cytosol	23.15	62.4
CDY05040	Canola	cytosol	67.36	61.85
CDY50229	Canola	cytosol	67.06	61.25
CDX90706	Canola	cytosol	65.88	60.49
CDX90705	Canola	cytosol, nucleus, plastid	64.39	59.94
CDY05044	Canola	nucleus	64.39	59.13
CDY05045	Canola	cytosol	22.85	58.33
CDY20989	Canola	cytosol	60.24	58.33
CDY05038	Canola	cytosol	36.5	54.67
CDY51551	Canola	cytosol	43.92	54.01
CDX90710	Canola	cytosol	23.15	53.42
CDY67336	Canola	cytosol	30.56	52.02
CDY24008	Canola	cytosol	18.69	48.46
CDY47117	Canola	cytosol	43.92	41.34
CDX84843	Canola	cytosol	31.75	40.68
CDY28855	Canola	cytosol	10.39	40.23
CDX84860	Canola	cytosol	41.84	39.94
CDX97774	Canola	cytosol	41.25	39.94
CDX76734	Canola	cytosol	41.25	39.83
CDX84859	Canola	cytosol	32.05	39.42
CDY17264	Canola	cytosol	35.91	39.41
CDX97775	Canola	mitochondrion	43.92	39.26
CDY66893	Canola	mitochondrion	43.32	39.04
CDY72582	Canola	mitochondrion	43.62	38.99
CDY12648	Canola	cytosol	14.54	38.89
CDX84302	Canola	cytosol	41.25	38.83
CDY64885	Canola	cytosol	16.91	38.78
CDY17263	Canola	cytosol	40.65	38.16
CDY22405	Canola	cytosol, plastid	40.95	38.02
CDX84844	Canola	plasma membrane	39.17	37.71
CDY29700	Canola	cytosol	40.06	37.6
CDY29702	Canola	cytosol	38.58	37.46
CDY02036	Canola	cytosol	32.05	36.86
CDY54214	Canola	cytosol	38.87	36.8
CDY56521	Canola	cytosol, plastid	39.76	36.71
CDX74917	Canola	cytosol	37.69	36.49
CDX91425	Canola	cytosol	37.69	36.49
CDY28882	Canola	cytosol, plastid	18.69	36.42
CDX72730	Canola	cytosol	42.43	36.39
CDY24010	Canola	plasma membrane	35.01	35.87
CDY29701	Canola	cytosol	14.24	35.56
CDY43958	Canola	cytosol	5.93	35.09
CDY17265	Canola	cytosol	43.03	34.61
CDY24030	Canola	cytosol	41.84	34.14
CDX74275	Canola	cytosol	34.72	33.24
CDY02032	Canola	cytosol	27.0	31.71
CDX91971	Canola	cytosol	35.61	29.41
CDY64633	Canola	cytosol, nucleus, plasma membrane	24.33	28.37
CDY02035	Canola	cytosol, plastid	12.46	21.21
CDX91970	Canola	cytosol	6.23	14.69
CDX74276	Canola	cytosol	6.23	14.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX90709	ProteinID:CDX90709	ProteinID:CDX90709.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151382001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE8E7F

Description

BnaA03g23890D

Coordinates

chrLK031864:-:85751..87377

Molecular Weight (calculated)

38706.6 Da

IEP (calculated)

7.516

GRAVY (calculated)

-0.179

Length

337 amino acids

Sequence
(BLAST)

001: MEQPLSPSLP DDVIIDIVAR VPRSYYPTLS LVSKSFRKLI ASPTFYKRRS FLGITQHRIY AVLRNRKTRD DFSFYILHRK LKCSNRLVIV GSRTLHHMCS
101: RGSYVLVGSK VYGFNDLHAL SIDCTSHTSQ PISDIPQLMT NKVANVIDKK IYLIGGSFLP DESGSREAWK NAVAVFDTET QSWECKLVKE DMHVGLGPFW
201: SDSMVMEGKI YLKDYSHSNF FAYEPEERKW ELMDKVLNYH KWVGACVVDD VLYYHDCFDM VLKAYDPKQR CWSVVNGLKD FLAVETAHSV RSEAVMCCAE
301: IALERRQGGE IWGHKESCDV VFEDGMFDMV KFVSVTV

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.