CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74275	Canola	cytosol	83.09	96.31
Bra001029.1-P	Field mustard	cytosol	82.84	96.02
CDY24008	Canola	cytosol	16.42	51.54
CDY05037	Canola	nucleus	8.58	48.61
CDY05045	Canola	cytosol	13.73	42.42
CDX84843	Canola	cytosol	27.21	42.21
CDY22405	Canola	cytosol, plastid	37.01	41.6
CDY28882	Canola	cytosol, plastid	16.91	39.88
CDX72730	Canola	cytosol	38.24	39.69
CDX76734	Canola	cytosol	32.6	38.11
CDY56521	Canola	cytosol, plastid	33.82	37.81
CDY29702	Canola	cytosol	32.11	37.75
CDY51551	Canola	cytosol	25.0	37.23
CDY02036	Canola	cytosol	26.72	37.2
CDX84844	Canola	plasma membrane	31.86	37.14
CDY29700	Canola	cytosol	32.6	37.05
CDX84860	Canola	cytosol	31.86	36.83
CDY41929	Canola	cytosol	16.91	36.51
CDY24010	Canola	plasma membrane	29.41	36.47
CDY47117	Canola	cytosol	31.62	36.03
CDX97774	Canola	cytosol	30.64	35.92
CDX91425	Canola	cytosol	30.64	35.92
CDX90705	Canola	cytosol, nucleus, plastid	31.86	35.91
CDX90709	Canola	cytosol	29.41	35.61
CDY54214	Canola	cytosol	30.88	35.39
CDY05040	Canola	cytosol	31.37	34.88
CDY29701	Canola	cytosol	11.52	34.81
CDX74917	Canola	cytosol	29.66	34.77
CDX90706	Canola	cytosol	31.13	34.6
CDY05044	Canola	nucleus	30.88	34.33
CDY05039	Canola	cytosol, nucleus, plastid	30.15	34.07
CDY17264	Canola	cytosol	25.49	33.88
CDY50229	Canola	cytosol	30.64	33.88
CDY27802	Canola	cytosol	29.41	33.61
CDY41927	Canola	cytosol	29.41	33.52
CDY05043	Canola	cytosol	29.66	33.52
CDX84302	Canola	cytosol	29.17	33.24
CDX97775	Canola	mitochondrion	30.39	32.89
AT3G10510.1	Thale cress	cytosol	29.9	32.88
CDY69309	Canola	cytosol	29.66	32.79
CDY72582	Canola	mitochondrion	30.15	32.63
CDY17263	Canola	cytosol	28.68	32.59
CDY66893	Canola	mitochondrion	29.66	32.35
CDY28855	Canola	cytosol	6.86	32.18
CDY64885	Canola	cytosol	11.52	31.97
CDY24030	Canola	cytosol	32.11	31.72
CDX79811	Canola	cytosol	27.21	31.36
CDY17265	Canola	cytosol	32.11	31.26
CDX84859	Canola	cytosol	20.83	31.02
CDY20989	Canola	cytosol	26.23	30.75
CDY12648	Canola	cytosol	9.31	30.16
CDX90710	Canola	cytosol	10.78	30.14
CDY64633	Canola	cytosol, nucleus, plasma membrane	21.08	29.76
CDY02032	Canola	cytosol	20.83	29.62
CDY05038	Canola	cytosol	16.18	29.33
CDY41928	Canola	cytosol	8.82	28.8
CDY67336	Canola	cytosol	12.25	25.25
CDY43958	Canola	cytosol	3.43	24.56
CDY02035	Canola	cytosol, plastid	10.05	20.71
CDX91970	Canola	cytosol	6.13	17.48
CDX74276	Canola	cytosol	6.13	17.48

Protein Annotations

EnsemblPlants:CDX91971	EnsemblPlantsGene:GSBRNA2T00153612001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	ProteinID:CDX91971	ProteinID:CDX91971.1
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE6115	MapMan:35.1	:

Description

BnaC03g32730D

Coordinates

chrLK031870:-:1043040..1045561

Molecular Weight (calculated)

46656.3 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.128

Length

408 amino acids

Sequence
(BLAST)

001: MAMCWITSLP EDVIIECVAR VPRRYYPSLS LVSKFCRSLI ASPQLYARRS LLDRTECCLY VTIYSRDDGY DRLYTLRQKI NSSGDYCLVP IPSLPPMPSY
101: GSYVAVGSKI YVMGGSCFEV SSNALTLIDC PLHTANHHLP NMPRAVASSV SGYINEKIYV IGGCRSRFPV FSEGPMDVMV FDVKSETWES KTRPDNLVFD
201: WYSNSAVTWD DKIYFRVLKH GFVYDPSQDK MEKDDMLKSY HWVGSECVIE GVLYYYSTAS KILRSYDLKE RCWKRVKGEI GLSGTTRART VTYDKKVVVF
301: LEKDIDRNKV ELWCAEIKLE RDEQGEICAR LDWCGCVFEG HSRLMNCLVL KIYLLATRLI VLASTASIPS KEFSGWDSSP IGHRSAAAYI TSLVYIRDGF
401: KAWIWRKP

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.