CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05039	Canola	cytosol, nucleus, plastid	94.74	94.74
CDX90709	Canola	cytosol	84.76	90.8
CDY41928	Canola	cytosol	27.42	79.2
CDX79811	Canola	cytosol	71.75	73.16
CDY69309	Canola	cytosol	73.68	72.09
CDY41929	Canola	cytosol	37.67	71.96
CDY41927	Canola	cytosol	71.19	71.79
CDY27802	Canola	cytosol	70.64	71.43
CDY05040	Canola	cytosol	69.25	68.12
CDY50229	Canola	cytosol	69.53	68.02
CDX90705	Canola	cytosol, nucleus, plastid	67.87	67.68
CDX90710	Canola	cytosol	27.15	67.12
CDY05037	Canola	nucleus	13.3	66.67
CDY05044	Canola	nucleus	67.59	66.48
CDX90706	Canola	cytosol	67.31	66.21
CDY05038	Canola	cytosol	40.72	65.33
CDY20989	Canola	cytosol	62.6	64.94
CDY05045	Canola	cytosol	22.71	62.12
CDY51551	Canola	cytosol	46.54	61.31
CDY67336	Canola	cytosol	32.69	59.6
CDY28855	Canola	cytosol	11.36	47.13
CDY24008	Canola	cytosol	16.9	46.92
CDX97774	Canola	cytosol	42.94	44.54
CDY66893	Canola	mitochondrion	45.98	44.38
CDX97775	Canola	mitochondrion	45.98	44.03
CDY72582	Canola	mitochondrion	45.71	43.77
CDX84859	Canola	cytosol	32.96	43.43
CDY17264	Canola	cytosol	36.84	43.32
CDY47117	Canola	cytosol	42.94	43.3
CDX76734	Canola	cytosol	41.83	43.27
CDX84860	Canola	cytosol	42.11	43.06
CDX84843	Canola	cytosol	31.3	42.97
CDX84302	Canola	cytosol	41.27	41.62
CDY22405	Canola	cytosol, plastid	41.27	41.05
CDX84844	Canola	plasma membrane	39.61	40.86
CDY29701	Canola	cytosol	15.24	40.74
CDY29700	Canola	cytosol	40.44	40.67
CDY02036	Canola	cytosol	32.96	40.61
CDY56521	Canola	cytosol, plastid	40.72	40.27
CDY54214	Canola	cytosol	39.61	40.17
CDY17263	Canola	cytosol	39.61	39.83
CDY29702	Canola	cytosol	37.95	39.48
CDY64885	Canola	cytosol	16.07	39.46
CDY24010	Canola	plasma membrane	35.73	39.21
CDX72730	Canola	cytosol	42.66	39.19
CDX74917	Canola	cytosol	37.12	38.51
CDX91425	Canola	cytosol	36.84	38.22
CDY28882	Canola	cytosol, plastid	18.01	37.57
CDY12648	Canola	cytosol	13.02	37.3
CDY17265	Canola	cytosol	42.94	36.99
CDY43958	Canola	cytosol	5.82	36.84
CDY24030	Canola	cytosol	41.55	36.32
CDX74275	Canola	cytosol	33.52	34.38
CDY02032	Canola	cytosol	27.15	34.15
CDX91971	Canola	cytosol	33.52	29.66
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.71	28.37
CDY02035	Canola	cytosol, plastid	13.57	24.75
CDX91970	Canola	cytosol	6.65	16.78
CDX74276	Canola	cytosol	6.65	16.78

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDY05043	ProteinID:CDY05043	ProteinID:CDY05043.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00119793001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EAFB2C

Description

BnaC03g28410D

Coordinates

chrLK031959:-:213368..214992

Molecular Weight (calculated)

41288.3 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.276

Length

361 amino acids

Sequence
(BLAST)

001: MSENMEQSLT PSLPDDVIID IVARVPRSHY PTLSLVSKSF RKLIASPTLY KRRSFLGITQ HRIYAVLRNP QTRDNFSFYI LHRKLKCSNR LVIVGSRTLH
101: HMSSRGSYVS VGSKVYGFND RDALSIDCTS HTSQSISNIP QLMTNKVANV IDRKVYLIGG SFLPDESGSR EAWKNAVAVF DTETQSWECK LVKEDMHVGL
201: GPFWSDSMVM EGKIYLKDYS NRNFFVYEPE ERKWELMDEV LNSEEWVGAC VVDDVLYYHD CSGMELKAYD PKQRCWSVVN GLKDFLAVET AHSVWSHAVS
301: YGEKKLALFF HKNHDGKEVI FCAEIALERR QGGEIWGQKE SCDVVIEDGM FDMVKFVSVT V

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.