CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05037	Canola	nucleus	10.61	52.78
Bra022024.1-P	Field mustard	cytosol	22.63	50.94
CDX84843	Canola	cytosol	36.59	49.81
CDY24008	Canola	cytosol	17.88	49.23
CDY43958	Canola	cytosol	7.82	49.12
CDX84859	Canola	cytosol	36.59	47.81
CDY02036	Canola	cytosol	39.11	47.78
CDX84860	Canola	cytosol	46.93	47.59
CDX97774	Canola	cytosol	46.09	47.41
CDY29702	Canola	cytosol	45.53	46.97
CDX76734	Canola	cytosol	45.25	46.42
CDY29700	Canola	cytosol	46.37	46.24
CDY12648	Canola	cytosol	16.2	46.03
CDY17264	Canola	cytosol	39.39	45.93
CDY28882	Canola	cytosol, plastid	22.07	45.66
CDX84844	Canola	plasma membrane	44.41	45.43
CDY56521	Canola	cytosol, plastid	46.09	45.21
CDY72582	Canola	mitochondrion	47.21	44.83
CDX97775	Canola	mitochondrion	46.93	44.56
CDX90710	Canola	cytosol	18.16	44.52
CDY66893	Canola	mitochondrion	46.09	44.12
CDX90709	Canola	cytosol	41.34	43.92
CDY54214	Canola	cytosol	43.58	43.82
CDY22405	Canola	cytosol, plastid	44.41	43.8
CDY24010	Canola	plasma membrane	40.22	43.77
CDX84302	Canola	cytosol	43.3	43.3
CDY64633	Canola	cytosol, nucleus, plasma membrane	34.92	43.25
CDY41928	Canola	cytosol	15.08	43.2
CDX74917	Canola	cytosol	41.9	43.1
CDY29701	Canola	cytosol	16.2	42.96
CDY05043	Canola	cytosol	43.3	42.94
CDY51551	Canola	cytosol	32.68	42.7
CDY05039	Canola	cytosol, nucleus, plastid	43.02	42.66
CDY02032	Canola	cytosol	34.08	42.51
CDY05040	Canola	cytosol	43.3	42.23
CDY64885	Canola	cytosol	17.32	42.18
CDY17265	Canola	cytosol	49.16	42.0
CDX91425	Canola	cytosol	40.78	41.95
CDY17263	Canola	cytosol	41.9	41.78
CDX90705	Canola	cytosol, nucleus, plastid	42.18	41.71
CDX90706	Canola	cytosol	42.46	41.42
CDY41927	Canola	cytosol	41.34	41.34
CDY05038	Canola	cytosol	25.98	41.33
CDX79811	Canola	cytosol	40.78	41.24
CDY41929	Canola	cytosol	21.51	40.74
CDX72730	Canola	cytosol	44.69	40.71
CDY05044	Canola	nucleus	41.62	40.6
CDY50229	Canola	cytosol	41.62	40.38
CDY28855	Canola	cytosol	9.78	40.23
CDY69309	Canola	cytosol	41.34	40.11
CDY27802	Canola	cytosol	39.66	39.78
CDY20989	Canola	cytosol	37.99	39.08
CDY24030	Canola	cytosol	44.97	38.98
CDY67336	Canola	cytosol	21.51	38.89
CDY05045	Canola	cytosol	13.69	37.12
CDX74275	Canola	cytosol	35.75	36.36
CDX91971	Canola	cytosol	36.03	31.62
CDY02035	Canola	cytosol, plastid	16.48	29.8
CDX91970	Canola	cytosol	5.87	14.69
CDX74276	Canola	cytosol	5.87	14.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078IAE0	EnsemblPlants:CDY47117	ProteinID:CDY47117	ProteinID:CDY47117.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00086754001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF36C9	SEG:seg

Description

BnaC04g13740DBnaC04g13740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAE0]

Coordinates

chrLK032698:-:30634..31710

Molecular Weight (calculated)

41094.7 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.127

Length

358 amino acids

Sequence
(BLAST)

001: MVSKTKAEDD KSSEPPSSLI IPSLPEDIII DILARSSRFD YPKLSLVSKH FRSLVASPDL HARRSLLACT EHCLYVALFD INNSSLYHWY ILCRKANGSH
101: YLLCAPSTLP FMYYPDCSVA VGSMIYVFGG VTNMTTNAFS MDCRSHTVET LPSIPIPLVC KFAGFIDGKI YVIGHCYHDN KKNLMVVFDI ETQKWEIKPE
201: MEAGFRARDA NLVMADKIYR TDYCSRSYVY KPVESRWEKD YMLIYCPHWV KNACVVDDVL LYQDREMNTL KAYDPNMRYW RVVEGLKNLL AEASGSQWLR
301: IVNYGGNMAL VFRRTSKIWC AEISLERRQG GEIWGKVEWC DHVLTGNFGT RKCLAVKV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.