CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17265	Canola	cytosol	71.99	52.74
CDY05037	Canola	nucleus	12.05	51.39
CDY24008	Canola	cytosol	21.5	50.77
Bra005411.1-P	Field mustard	cytosol	91.53	50.45
CDY28855	Canola	cytosol	14.01	49.43
CDY29701	Canola	cytosol	20.2	45.93
CDY17263	Canola	cytosol	53.09	45.4
CDX84302	Canola	cytosol	52.77	45.25
CDX84860	Canola	cytosol	49.19	42.78
CDX97774	Canola	cytosol	46.58	41.09
CDX84859	Canola	cytosol	36.16	40.51
CDY05045	Canola	cytosol	17.26	40.15
CDX76734	Canola	cytosol	45.6	40.11
CDY28882	Canola	cytosol, plastid	22.48	39.88
CDY56521	Canola	cytosol, plastid	47.23	39.73
CDY47117	Canola	cytosol	45.93	39.39
CDY54214	Canola	cytosol	45.28	39.04
CDY29700	Canola	cytosol	45.28	38.72
CDY29702	Canola	cytosol	43.65	38.62
CDY43958	Canola	cytosol	7.17	38.6
CDY02036	Canola	cytosol	36.48	38.23
CDY66893	Canola	mitochondrion	45.6	37.43
CDY72582	Canola	mitochondrion	45.6	37.14
CDX97775	Canola	mitochondrion	45.6	37.14
CDY05039	Canola	cytosol, nucleus, plastid	43.32	36.84
CDY05043	Canola	cytosol	43.32	36.84
CDX84844	Canola	plasma membrane	41.69	36.57
CDX84843	Canola	cytosol	31.27	36.5
CDX79811	Canola	cytosol	42.02	36.44
CDY02032	Canola	cytosol	33.88	36.24
CDX90705	Canola	cytosol, nucleus, plastid	42.67	36.19
CDY24030	Canola	cytosol	48.53	36.08
CDX90709	Canola	cytosol	39.41	35.91
CDY41927	Canola	cytosol	41.69	35.75
CDY05044	Canola	nucleus	42.67	35.69
CDY05040	Canola	cytosol	42.35	35.42
CDY22405	Canola	cytosol, plastid	41.69	35.26
CDY69309	Canola	cytosol	42.35	35.23
CDY41928	Canola	cytosol	14.33	35.2
CDY41929	Canola	cytosol	21.5	34.92
CDX90706	Canola	cytosol	41.69	34.88
CDY50229	Canola	cytosol	41.69	34.69
CDY51551	Canola	cytosol	30.94	34.67
CDY24010	Canola	plasma membrane	37.13	34.65
CDX74917	Canola	cytosol	39.09	34.48
CDX91425	Canola	cytosol	39.09	34.48
CDX90710	Canola	cytosol	16.29	34.25
CDY05038	Canola	cytosol	25.08	34.22
CDY27802	Canola	cytosol	39.41	33.89
CDX72730	Canola	cytosol	43.32	33.84
CDY64885	Canola	cytosol	15.96	33.33
CDY20989	Canola	cytosol	36.81	32.47
CDY64633	Canola	cytosol, nucleus, plasma membrane	29.32	31.14
CDX74275	Canola	cytosol	35.18	30.68
CDY67336	Canola	cytosol	16.61	25.76
CDX91971	Canola	cytosol	33.88	25.49
CDY12648	Canola	cytosol	8.47	20.63
CDY02035	Canola	cytosol, plastid	11.07	17.17
CDX74276	Canola	cytosol	5.86	12.59
CDX91970	Canola	cytosol	5.86	12.59

Protein Annotations

EnsemblPlants:CDY17264	EnsemblPlantsGene:GSBRNA2T00095345001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY17264	ProteinID:CDY17264.1	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EED8AA	UniProt:A0A078FVS9	MapMan:35.1	:

Description

BnaA05g09240DBnaA05g09240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVS9]

Coordinates

chrLK032071:+:708096..709583

Molecular Weight (calculated)

35519.2 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.174

Length

307 amino acids

Sequence
(BLAST)

001: MEDSLRMSSK TRLKKEQSSE QPSLIPSLPE EIIVDILARV GRCRYPKLSL VSKHFRSLVT SHELYERRSL LGCTEHSLYV VLCNKENDNH YCYVLYRKAN
101: GNHSLVLIPS LPKMPRKGGF VAVGSRIYVF VADIIDGKIY VTGYRCNMAV FNTETQMWEP KTIPETMNGY MWACDCVVMA GKMYMRDPVN SFVFVYESKE
201: IKWEMDKMLN KFEWKDACVV DDVLYYYDSG WKVLRAYDPK ESSWVVVNGL AELLADARFS AWSYTGSYGG KLAMFYSKIT GKTKVIRQIQ TASPIFFINL
301: YFIHKKL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.