Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05037 | Canola | nucleus | 45.45 | 83.33 |
| CDY24008 | Canola | cytosol | 38.64 | 39.23 |
| CDY41929 | Canola | cytosol | 54.55 | 38.1 |
| CDY29701 | Canola | cytosol | 36.36 | 35.56 |
| CDY51551 | Canola | cytosol | 62.12 | 29.93 |
| CDY05044 | Canola | nucleus | 80.3 | 28.88 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 75.76 | 27.62 |
| Bra000664.1-P | Field mustard | cytosol, nucleus, plastid | 75.76 | 27.62 |
| CDY50229 | Canola | cytosol | 68.94 | 24.66 |
| CDY05040 | Canola | cytosol | 68.18 | 24.52 |
| CDX90706 | Canola | cytosol | 66.67 | 23.98 |
| CDX90709 | Canola | cytosol | 58.33 | 22.85 |
| CDY69309 | Canola | cytosol | 63.64 | 22.76 |
| CDY05043 | Canola | cytosol | 62.12 | 22.71 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 60.61 | 22.16 |
| CDY20989 | Canola | cytosol | 58.33 | 22.13 |
| CDX79811 | Canola | cytosol | 59.09 | 22.03 |
| CDY27802 | Canola | cytosol | 55.3 | 20.45 |
| CDY41927 | Canola | cytosol | 55.3 | 20.39 |
| CDY28882 | Canola | cytosol, plastid | 26.52 | 20.23 |
| CDX84843 | Canola | cytosol | 39.39 | 19.77 |
| CDY17264 | Canola | cytosol | 40.15 | 17.26 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 34.85 | 15.92 |
| CDY02036 | Canola | cytosol | 34.85 | 15.7 |
| CDY24010 | Canola | plasma membrane | 38.64 | 15.5 |
| CDX76734 | Canola | cytosol | 40.15 | 15.19 |
| CDX74275 | Canola | cytosol | 40.15 | 15.06 |
| CDY66893 | Canola | mitochondrion | 42.42 | 14.97 |
| CDX91425 | Canola | cytosol | 39.39 | 14.94 |
| CDX84844 | Canola | plasma membrane | 39.39 | 14.86 |
| CDX97775 | Canola | mitochondrion | 42.42 | 14.85 |
| CDY29700 | Canola | cytosol | 40.15 | 14.76 |
| CDX74917 | Canola | cytosol | 38.64 | 14.66 |
| CDY72582 | Canola | mitochondrion | 41.67 | 14.59 |
| CDX84302 | Canola | cytosol | 39.39 | 14.53 |
| CDX84860 | Canola | cytosol | 38.64 | 14.45 |
| CDY54214 | Canola | cytosol | 38.64 | 14.33 |
| CDY56521 | Canola | cytosol, plastid | 39.39 | 14.25 |
| CDX97774 | Canola | cytosol | 37.12 | 14.08 |
| CDY02032 | Canola | cytosol | 30.3 | 13.94 |
| CDY29702 | Canola | cytosol | 36.36 | 13.83 |
| CDY22405 | Canola | cytosol, plastid | 37.88 | 13.77 |
| CDX91971 | Canola | cytosol | 42.42 | 13.73 |
| CDY47117 | Canola | cytosol | 37.12 | 13.69 |
| CDY17263 | Canola | cytosol | 37.12 | 13.65 |
| CDX72730 | Canola | cytosol | 38.64 | 12.98 |
| CDY17265 | Canola | cytosol | 40.91 | 12.89 |
| CDY24030 | Canola | cytosol | 37.88 | 12.11 |
| CDX84859 | Canola | cytosol | 20.45 | 9.85 |
| CDX91970 | Canola | cytosol | 8.33 | 7.69 |
| CDX74276 | Canola | cytosol | 8.33 | 7.69 |
| CDY02035 | Canola | cytosol, plastid | 9.85 | 6.57 |
| CDX90710 | Canola | cytosol | 4.55 | 4.11 |
| CDY05038 | Canola | cytosol | 4.55 | 2.67 |
| CDY28855 | Canola | cytosol | 1.52 | 2.3 |
| CDY67336 | Canola | cytosol | 3.03 | 2.02 |
| CDY41928 | Canola | cytosol | 1.52 | 1.6 |
| CDY64885 | Canola | cytosol | 1.52 | 1.36 |
| CDY12648 | Canola | cytosol | 0.76 | 0.79 |
| CDY43958 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05045 | EnsemblPlantsGene:GSBRNA2T00119795001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 |
| PFscan:PS50181 | ProteinID:CDY05045 | ProteinID:CDY05045.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EE76D5 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g28430D
Coordinates
chrLK031959:-:222077..222475
Molecular Weight (calculated)
15358.9 Da
IEP (calculated)
10.483
GRAVY (calculated)
-0.242
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MSENMEQFLE LSVSPLIPSL PDDVTVDIVA RVPRSHYPTL SLVSKKFRKL IASPKLYKRR SQLGITQHRV YALLRNRDTG DCRFYILHRK LNSRNRLVIV
101: PSLPPVSSRE MRSCYGLMQH ELYLGLSYFH LS
101: PSLPPVSSRE MRSCYGLMQH ELYLGLSYFH LS
001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
Arabidopsis Description
F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.