Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28855 | Canola | cytosol | 35.09 | 22.99 |
| CDY64885 | Canola | cytosol | 31.58 | 12.24 |
| CDY05038 | Canola | cytosol | 42.11 | 10.67 |
| CDX84859 | Canola | cytosol | 43.86 | 9.12 |
| CDY02032 | Canola | cytosol | 45.61 | 9.06 |
| CDY12648 | Canola | cytosol | 17.54 | 7.94 |
| CDY47117 | Canola | cytosol | 49.12 | 7.82 |
| CDY17263 | Canola | cytosol | 47.37 | 7.52 |
| CDX76734 | Canola | cytosol | 45.61 | 7.45 |
| CDX84844 | Canola | plasma membrane | 45.61 | 7.43 |
| CDY72582 | Canola | mitochondrion | 49.12 | 7.43 |
| CDX97775 | Canola | mitochondrion | 49.12 | 7.43 |
| CDY56521 | Canola | cytosol, plastid | 47.37 | 7.4 |
| CDY29702 | Canola | cytosol | 43.86 | 7.2 |
| CDX97774 | Canola | cytosol | 43.86 | 7.18 |
| CDY17264 | Canola | cytosol | 38.6 | 7.17 |
| CDX84860 | Canola | cytosol | 43.86 | 7.08 |
| CDY24010 | Canola | plasma membrane | 40.35 | 6.99 |
| CDX84302 | Canola | cytosol | 43.86 | 6.98 |
| CDY54214 | Canola | cytosol | 42.11 | 6.74 |
| CDY29700 | Canola | cytosol | 42.11 | 6.69 |
| CDY66893 | Canola | mitochondrion | 43.86 | 6.68 |
| CDX79811 | Canola | cytosol | 40.35 | 6.5 |
| CDY17265 | Canola | cytosol | 47.37 | 6.44 |
| CDY28882 | Canola | cytosol, plastid | 19.3 | 6.36 |
| CDX90710 | Canola | cytosol | 15.79 | 6.16 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 38.6 | 6.08 |
| CDY24030 | Canola | cytosol | 43.86 | 6.05 |
| CDY05044 | Canola | nucleus | 38.6 | 5.99 |
| CDX90709 | Canola | cytosol | 35.09 | 5.93 |
| CDY05043 | Canola | cytosol | 36.84 | 5.82 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 36.84 | 5.82 |
| CDY69309 | Canola | cytosol | 36.84 | 5.69 |
| CDY27802 | Canola | cytosol | 35.09 | 5.6 |
| CDY41927 | Canola | cytosol | 35.09 | 5.59 |
| CDY05040 | Canola | cytosol | 33.33 | 5.18 |
| CDX74917 | Canola | cytosol | 31.58 | 5.17 |
| CDY20989 | Canola | cytosol | 31.58 | 5.17 |
| CDX91425 | Canola | cytosol | 31.58 | 5.17 |
| CDX84843 | Canola | cytosol | 22.81 | 4.94 |
| CDX90706 | Canola | cytosol | 31.58 | 4.9 |
| CDY50229 | Canola | cytosol | 31.58 | 4.88 |
| CDX74275 | Canola | cytosol | 24.56 | 3.98 |
| CDY22405 | Canola | cytosol, plastid | 22.81 | 3.58 |
| CDX72730 | Canola | cytosol | 24.56 | 3.56 |
| CDX91971 | Canola | cytosol | 24.56 | 3.43 |
| CDY41929 | Canola | cytosol | 10.53 | 3.17 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 10.53 | 2.08 |
| CDY67336 | Canola | cytosol | 5.26 | 1.52 |
| CDY02036 | Canola | cytosol | 5.26 | 1.02 |
| CDY29701 | Canola | cytosol | 1.75 | 0.74 |
| CDY51551 | Canola | cytosol | 1.75 | 0.36 |
| CDY24008 | Canola | cytosol | 0.0 | 0.0 |
| CDY41928 | Canola | cytosol | 0.0 | 0.0 |
| CDY05045 | Canola | cytosol | 0.0 | 0.0 |
| CDY05037 | Canola | nucleus | 0.0 | 0.0 |
| CDY02035 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDX91970 | Canola | cytosol | 0.0 | 0.0 |
| CDX74276 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY43958 | EnsemblPlantsGene:GSBRNA2T00079340001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | ProteinID:CDY43958 | ProteinID:CDY43958.1 | SUPFAM:SSF117281 | UniParc:UPI0004EEAD01 | UniProt:A0A078I4B3 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA02g24360DBnaA02g24360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4B3]
Coordinates
chrLK032575:+:31907..32080
Molecular Weight (calculated)
6633.9 Da
IEP (calculated)
5.585
GRAVY (calculated)
-0.267
Length
57 amino acids
Sequence
(BLAST)
(BLAST)
1: MVVFNIETKI WEHVMTEPEM NYALTTSNAC AVMADKIYTK AFCSSHVYEP KESKWQT
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.