CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005410.1-P	Field mustard	cytosol	82.34	96.1
CDY17264	Canola	cytosol	52.74	71.99
CDX84302	Canola	cytosol	48.45	56.7
CDY17263	Canola	cytosol	48.21	56.27
CDY24008	Canola	cytosol	16.71	53.85
CDX97774	Canola	cytosol	43.68	52.59
CDX84859	Canola	cytosol	33.89	51.82
CDY05037	Canola	nucleus	8.83	51.39
CDX84843	Canola	cytosol	31.98	50.95
CDY28855	Canola	cytosol	10.5	50.57
CDX84860	Canola	cytosol	42.24	50.14
CDX76734	Canola	cytosol	41.53	49.86
CDX90710	Canola	cytosol	17.18	49.32
CDY47117	Canola	cytosol	42.0	49.16
CDY64885	Canola	cytosol	17.18	48.98
CDY56521	Canola	cytosol, plastid	42.48	48.77
CDY29702	Canola	cytosol	40.1	48.41
CDY54214	Canola	cytosol	40.81	48.03
CDY41928	Canola	cytosol	14.32	48.0
CDY29700	Canola	cytosol	41.05	47.91
CDX84844	Canola	plasma membrane	39.86	47.71
CDY43958	Canola	cytosol	6.44	47.37
CDY66893	Canola	mitochondrion	42.24	47.33
CDY02036	Canola	cytosol	32.94	47.1
CDX97775	Canola	mitochondrion	42.24	46.95
CDY72582	Canola	mitochondrion	42.24	46.95
CDY28882	Canola	cytosol, plastid	19.33	46.82
CDY29701	Canola	cytosol	14.8	45.93
CDY24010	Canola	plasma membrane	36.04	45.9
CDY12648	Canola	cytosol	13.6	45.24
CDX74917	Canola	cytosol	36.75	44.25
CDY41927	Canola	cytosol	37.47	43.85
CDX79811	Canola	cytosol	36.99	43.79
CDY02032	Canola	cytosol	29.83	43.55
CDY05039	Canola	cytosol, nucleus, plastid	37.47	43.49
CDY51551	Canola	cytosol	28.4	43.43
CDX91425	Canola	cytosol	36.04	43.39
CDY05038	Canola	cytosol	23.15	43.11
CDY05044	Canola	nucleus	37.71	43.05
CDX90709	Canola	cytosol	34.61	43.03
CDY05043	Canola	cytosol	36.99	42.94
CDY22405	Canola	cytosol, plastid	36.99	42.7
CDX90705	Canola	cytosol, nucleus, plastid	36.75	42.54
CDY50229	Canola	cytosol	37.23	42.28
CDY24030	Canola	cytosol	41.53	42.13
CDY05040	Canola	cytosol	36.52	41.69
CDY67336	Canola	cytosol	19.57	41.41
CDY69309	Canola	cytosol	36.28	41.19
CDX90706	Canola	cytosol	36.04	41.14
CDX72730	Canola	cytosol	38.42	40.97
CDY05045	Canola	cytosol	12.89	40.91
CDY20989	Canola	cytosol	33.65	40.52
CDY27802	Canola	cytosol	34.37	40.34
CDY41929	Canola	cytosol	17.18	38.1
CDX74275	Canola	cytosol	30.79	36.65
CDY64633	Canola	cytosol, nucleus, plasma membrane	24.34	35.29
CDX91971	Canola	cytosol	31.26	32.11
CDY02035	Canola	cytosol, plastid	14.32	30.3
CDX91970	Canola	cytosol	4.53	13.29
CDX74276	Canola	cytosol	4.53	13.29

Protein Annotations

EnsemblPlants:CDY17265	EnsemblPlantsGene:GSBRNA2T00095346001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY17265	ProteinID:CDY17265.1	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EEC757	UniProt:A0A078FRV8	MapMan:35.1	:

Description

BnaA05g09230DBnaA05g09230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRV8]

Coordinates

chrLK032071:+:709693..713194

Molecular Weight (calculated)

47884.0 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.198

Length

419 amino acids

Sequence
(BLAST)

001: MGYISEDGHG CVWKDWWLKG DFQNRITLGV AVGSCVLGFI LSHKVRVVVR FSLILEDSLR MSSKTRSKKE QSSEPQSLIP SLPEEIIVDI LARVGSCYYP
101: KLSLVSKHFR SLVTSHELYA RRSLLGCTEH SLYVVLCNRE NGNYQLYALR QKANGNHSLV LIPSLPKLPR KGGFVAVGSR IYVFGRFKSI PQNAISIDCR
201: YQTVHPLPRM NVTMSVSVAD IIDGNIYLTG YCSNPTKMVM MVFNTETEMW EPKKTTPEKM SGYLWENECV VMAGKMYMSD PSYNFVYDPK ESKWETDKML
301: NMFKWRKARV VDDVLYYYDS GWGVLRAYDP KGSSWVMVNG LEELLADARF SDWSYTASYG GKLAMIFTKT TGRTEVIRCA EISLERRRQG KEIWGKVEWC
401: DDVLVGGDFY VKKTLDVIV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.