CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020387.1-P	Field mustard	cytosol	94.58	94.58
CDY41928	Canola	cytosol	25.2	74.4
CDY05043	Canola	cytosol	72.09	73.68
CDY05039	Canola	cytosol, nucleus, plastid	71.54	73.13
CDX79811	Canola	cytosol	69.38	72.32
CDY05037	Canola	nucleus	13.82	70.83
CDX90709	Canola	cytosol	64.23	70.33
CDY41927	Canola	cytosol	66.94	68.99
CDY50229	Canola	cytosol	68.83	68.83
CDY05040	Canola	cytosol	67.48	67.85
CDY27802	Canola	cytosol	65.31	67.51
CDY20989	Canola	cytosol	63.41	67.24
CDX90705	Canola	cytosol, nucleus, plastid	65.85	67.13
CDX90710	Canola	cytosol	26.56	67.12
CDX90706	Canola	cytosol	65.58	65.94
CDY05044	Canola	nucleus	65.58	65.94
CDY05038	Canola	cytosol	39.57	64.89
CDY41929	Canola	cytosol	33.06	64.55
CDY05045	Canola	cytosol	22.76	63.64
CDY51551	Canola	cytosol	45.8	61.68
CDY67336	Canola	cytosol	31.71	59.09
CDY28855	Canola	cytosol	11.38	48.28
CDY24008	Canola	cytosol	15.72	44.62
CDX76734	Canola	cytosol	41.46	43.84
CDX97774	Canola	cytosol	40.65	43.1
CDX84859	Canola	cytosol	31.98	43.07
CDY17264	Canola	cytosol	35.23	42.35
CDX84860	Canola	cytosol	40.38	42.21
CDX97775	Canola	mitochondrion	42.82	41.91
CDX84843	Canola	cytosol	29.81	41.83
CDY72582	Canola	mitochondrion	42.55	41.64
CDX84302	Canola	cytosol	40.38	41.62
CDY66893	Canola	mitochondrion	42.01	41.44
CDY47117	Canola	cytosol	40.11	41.34
CDY54214	Canola	cytosol	39.57	41.01
CDY29702	Canola	cytosol	38.48	40.92
CDY22405	Canola	cytosol, plastid	40.11	40.77
CDY29700	Canola	cytosol	39.3	40.39
CDY56521	Canola	cytosol, plastid	39.84	40.27
CDY64885	Canola	cytosol	15.99	40.14
CDY12648	Canola	cytosol	13.55	39.68
CDY17263	Canola	cytosol	38.48	39.55
CDX84844	Canola	plasma membrane	37.4	39.43
CDX74917	Canola	cytosol	37.13	39.37
CDX91425	Canola	cytosol	37.13	39.37
CDY02036	Canola	cytosol	30.89	38.91
CDX72730	Canola	cytosol	41.19	38.68
CDY24010	Canola	plasma membrane	34.15	38.3
CDY28882	Canola	cytosol, plastid	17.62	37.57
CDY43958	Canola	cytosol	5.69	36.84
CDY17265	Canola	cytosol	41.19	36.28
CDY24030	Canola	cytosol	40.11	35.84
CDY02032	Canola	cytosol	27.37	35.19
CDY29701	Canola	cytosol	12.74	34.81
CDX74275	Canola	cytosol	32.52	34.09
CDX91971	Canola	cytosol	32.79	29.66
CDY64633	Canola	cytosol, nucleus, plasma membrane	21.95	28.03
CDY02035	Canola	cytosol, plastid	11.92	22.22
CDX74276	Canola	cytosol	5.69	14.69
CDX91970	Canola	cytosol	5.69	14.69

Protein Annotations

EnsemblPlants:CDY69309	EnsemblPlantsGene:GSBRNA2T00086561001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	ProteinID:CDY69309
ProteinID:CDY69309.1	SEG:seg	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EC1E36	UniProt:A0A078JR90
MapMan:35.1	:	:	:	:	:

Description

BnaAnng29940DBnaAnng29940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR90]

Coordinates

chrLK039104:+:1076..2754

Molecular Weight (calculated)

41994.6 Da

IEP (calculated)

7.495

GRAVY (calculated)

-0.136

Length

369 amino acids

Sequence
(BLAST)

001: MSELMEQFLA LSVSPPLIPS LPDDVTVDIV AARVPINHYP TLSRVSKSFR KLIASPTLYK RRSQLGITQH RVYAVLHSRK TRASSFYILH RKVDDCSNRL
101: VVVRSITLKS SCGNYVPVGS KVYVFNDLDA LSIDCTSHTS QSIPEIPQRM AYKVVNVVDE KKIYVIGDSV CHVVKEEGGV LRETWKKAVT VFDTETQLWE
201: PKLVKEDMFV GVLWSDSVVM DGKIYMKDYS KGNSFVYEPD ERKWELMDEV LNSKAWEGAC VVDNVLYYHD LRALRAYDPK QSCWSVVNGL GDFLVAKTAR
301: SRWCHAVNYG EKKLALFFHK NHEGKEVIFC AEIALERRQG GEIWGQMESC DVVIEDGLFD MVKFVSVSL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.