CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000665.1-P	Field mustard	cytosol	98.37	98.37
CDY05040	Canola	cytosol	95.64	95.64
CDY05037	Canola	nucleus	14.71	75.0
CDY41928	Canola	cytosol	23.98	70.4
CDY50229	Canola	cytosol	70.57	70.19
CDY20989	Canola	cytosol	64.31	67.82
CDY05043	Canola	cytosol	66.21	67.31
CDY05039	Canola	cytosol, nucleus, plastid	65.94	67.04
CDX79811	Canola	cytosol	64.58	66.95
CDX90705	Canola	cytosol, nucleus, plastid	65.94	66.85
CDY05045	Canola	cytosol	23.98	66.67
CDX90709	Canola	cytosol	60.49	65.88
CDY69309	Canola	cytosol	65.94	65.58
CDY05044	Canola	nucleus	65.4	65.4
CDY27802	Canola	cytosol	62.4	64.15
CDY51551	Canola	cytosol	47.68	63.87
CDY41927	Canola	cytosol	62.13	63.69
CDY05038	Canola	cytosol	38.42	62.67
CDX90710	Canola	cytosol	24.8	62.33
CDY41929	Canola	cytosol	31.34	60.85
CDY67336	Canola	cytosol	29.7	55.05
CDY24008	Canola	cytosol	16.62	46.92
CDX76734	Canola	cytosol	42.51	44.7
CDX84843	Canola	cytosol	31.34	43.73
CDY28855	Canola	cytosol	10.35	43.68
CDX84859	Canola	cytosol	32.15	43.07
CDX84860	Canola	cytosol	41.14	42.78
CDX97774	Canola	cytosol	40.33	42.53
CDY47117	Canola	cytosol	41.42	42.46
CDX97775	Canola	mitochondrion	43.6	42.44
CDY72582	Canola	mitochondrion	43.32	42.18
CDY66893	Canola	mitochondrion	42.78	41.98
CDY17264	Canola	cytosol	34.88	41.69
CDX84302	Canola	cytosol	40.05	41.06
CDY28882	Canola	cytosol, plastid	19.35	41.04
CDY56521	Canola	cytosol, plastid	40.6	40.82
CDY22405	Canola	cytosol, plastid	40.33	40.77
CDY64885	Canola	cytosol	16.08	40.14
CDX84844	Canola	plasma membrane	38.15	40.0
CDY29701	Canola	cytosol	14.71	40.0
CDY54214	Canola	cytosol	38.69	39.89
CDY29702	Canola	cytosol	37.33	39.48
CDX72730	Canola	cytosol	41.69	38.93
CDY02036	Canola	cytosol	31.06	38.91
CDY17263	Canola	cytosol	37.87	38.72
CDY29700	Canola	cytosol	37.87	38.72
CDY24010	Canola	plasma membrane	34.33	38.3
CDX74917	Canola	cytosol	36.24	38.22
CDY02032	Canola	cytosol	29.7	37.98
CDX91425	Canola	cytosol	35.69	37.64
CDY24030	Canola	cytosol	40.6	36.08
CDY17265	Canola	cytosol	41.14	36.04
CDX74275	Canola	cytosol	34.06	35.51
CDY12648	Canola	cytosol	11.99	34.92
CDY43958	Canola	cytosol	4.9	31.58
CDX91971	Canola	cytosol	34.6	31.13
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.62	28.72
CDY02035	Canola	cytosol, plastid	13.62	25.25
CDX91970	Canola	cytosol	5.99	15.38
CDX74276	Canola	cytosol	5.99	15.38

Protein Annotations

EnsemblPlants:CDX90706	EnsemblPlantsGene:GSBRNA2T00151379001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX90706	ProteinID:CDX90706.1	SEG:seg
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF14AC	MapMan:35.1	:

Description

BnaA03g23860D

Coordinates

chrLK031864:+:71540..73208

Molecular Weight (calculated)

41678.3 Da

IEP (calculated)

8.128

GRAVY (calculated)

-0.183

Length

367 amino acids

Sequence
(BLAST)

001: MSENMKQSPE MLLSPLIPSL PDDVTIDIVA RVPRSHYPTL SLVSKSFRNL IASSKLYKRR SQLGITQRRL YAVLRNRNTG EFSFYVLHRK LNGYNRLVVV
101: RSLPFMSSRG SCVSVGSKVY VFNDLSVLSF DCTSHTVQRG PNFPQRMSYK EVNVIGKKVY VIGDAFCHYV QGTGWMKVWQ KAVTVFDTET ESLEPKLVHE
201: DMAVGVGPFW SDSVVLEDKI YLKGYMNGNS FVYGPEEREW ELMDEVMNSK DWEGACVVDG VLYYHDRSGK VLRAYDPKQG CWSVVNGLEE FLAVETGRSR
301: LSITVNYGAE KLALFFPKKQ YGEKMICCAE IGLERRQGGE IWGKVQWCHI VIGDGPFDMV ECVSVTV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.