Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74276 | Canola | cytosol | 100.0 | 100.0 |
| CDY41929 | Canola | cytosol | 15.38 | 11.64 |
| CDY24008 | Canola | cytosol | 9.09 | 10.0 |
| CDY05037 | Canola | nucleus | 4.9 | 9.72 |
| CDY29701 | Canola | cytosol | 8.39 | 8.89 |
| CDX84843 | Canola | cytosol | 15.38 | 8.37 |
| CDY05045 | Canola | cytosol | 7.69 | 8.33 |
| CDY28882 | Canola | cytosol, plastid | 9.79 | 8.09 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 18.88 | 7.48 |
| CDY66893 | Canola | mitochondrion | 18.88 | 7.22 |
| CDX97774 | Canola | cytosol | 17.48 | 7.18 |
| CDY72582 | Canola | mitochondrion | 18.88 | 7.16 |
| CDX97775 | Canola | mitochondrion | 18.88 | 7.16 |
| CDX74275 | Canola | cytosol | 16.78 | 6.82 |
| CDY27802 | Canola | cytosol | 16.78 | 6.72 |
| CDY41927 | Canola | cytosol | 16.78 | 6.7 |
| CDY05043 | Canola | cytosol | 16.78 | 6.65 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 16.78 | 6.63 |
| CDX91425 | Canola | cytosol | 16.08 | 6.61 |
| CDY05044 | Canola | nucleus | 16.78 | 6.54 |
| CDY05040 | Canola | cytosol | 16.08 | 6.27 |
| CDX90709 | Canola | cytosol | 14.69 | 6.23 |
| CDY54214 | Canola | cytosol | 15.38 | 6.18 |
| CDY02036 | Canola | cytosol | 12.59 | 6.14 |
| CDY29700 | Canola | cytosol | 15.38 | 6.13 |
| CDX91971 | Canola | cytosol | 17.48 | 6.13 |
| CDY29702 | Canola | cytosol | 14.69 | 6.05 |
| CDX74917 | Canola | cytosol | 14.69 | 6.03 |
| CDY20989 | Canola | cytosol | 14.69 | 6.03 |
| CDX90706 | Canola | cytosol | 15.38 | 5.99 |
| CDX79811 | Canola | cytosol | 14.69 | 5.93 |
| CDY02032 | Canola | cytosol | 11.89 | 5.92 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 11.89 | 5.88 |
| CDY47117 | Canola | cytosol | 14.69 | 5.87 |
| CDY17264 | Canola | cytosol | 12.59 | 5.86 |
| CDX84859 | Canola | cytosol | 11.19 | 5.84 |
| CDY50229 | Canola | cytosol | 14.69 | 5.69 |
| CDY69309 | Canola | cytosol | 14.69 | 5.69 |
| CDX84860 | Canola | cytosol | 13.99 | 5.67 |
| CDX84302 | Canola | cytosol | 13.99 | 5.59 |
| CDY22405 | Canola | cytosol, plastid | 13.99 | 5.51 |
| CDY51551 | Canola | cytosol | 10.49 | 5.47 |
| CDY24010 | Canola | plasma membrane | 12.59 | 5.47 |
| CDX84844 | Canola | plasma membrane | 13.29 | 5.43 |
| CDY17263 | Canola | cytosol | 13.29 | 5.29 |
| CDY02035 | Canola | cytosol, plastid | 6.99 | 5.05 |
| CDY56521 | Canola | cytosol, plastid | 12.59 | 4.93 |
| CDY05038 | Canola | cytosol | 7.69 | 4.89 |
| CDY24030 | Canola | cytosol | 13.99 | 4.84 |
| CDX72730 | Canola | cytosol | 13.29 | 4.83 |
| CDX90710 | Canola | cytosol | 4.9 | 4.79 |
| CDY12648 | Canola | cytosol | 4.2 | 4.76 |
| CDX76734 | Canola | cytosol | 11.19 | 4.58 |
| CDY67336 | Canola | cytosol | 6.29 | 4.55 |
| CDY17265 | Canola | cytosol | 13.29 | 4.53 |
| CDY41928 | Canola | cytosol | 2.8 | 3.2 |
| CDY64885 | Canola | cytosol | 2.1 | 2.04 |
| CDY28855 | Canola | cytosol | 0.7 | 1.15 |
| CDY43958 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2700 | MapMan:17.1.3.1.21 | GO:A0A078CB14 | EnsemblPlants:CDX91970 | ProteinID:CDX91970 | ProteinID:CDX91970.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00153611001 | InterPro:IPR038111 | PFAM:PD003854 | PFAM:PF01090 |
| ScanProsite:PS00628 | PANTHER:PTHR11710 | PANTHER:PTHR11710:SF8 | InterPro:Ribosomal_S19e | InterPro:Ribosomal_S19e_CS | InterPro:Ribosomal_S19e_sf |
| SMART:SM01413 | SUPFAM:SSF46785 | UniParc:UPI0001BA9289 | InterPro:WH_DNA-bd_sf | : | : |
Description
BnaC03g32720D
Coordinates
chrLK031870:-:1041611..1042990
Molecular Weight (calculated)
15813.1 Da
IEP (calculated)
10.669
GRAVY (calculated)
-0.484
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPPWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVEIDTKG GRRITSSGQR DLDQVAGRIA AEI
101: ARHILQQLET MNIVEIDTKG GRRITSSGQR DLDQVAGRIA AEI
001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP
Arabidopsis Description
RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.