Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05037 | Canola | nucleus | 12.46 | 50.0 |
| CDY24008 | Canola | cytosol | 21.8 | 48.46 |
| CDY28882 | Canola | cytosol, plastid | 24.57 | 41.04 |
| CDY41929 | Canola | cytosol | 23.88 | 36.51 |
| CDX84843 | Canola | cytosol | 32.18 | 35.36 |
| CDY47117 | Canola | cytosol | 43.25 | 34.92 |
| CDY05045 | Canola | cytosol | 15.92 | 34.85 |
| CDY29701 | Canola | cytosol | 16.26 | 34.81 |
| CDY17264 | Canola | cytosol | 31.14 | 29.32 |
| CDX84844 | Canola | plasma membrane | 34.95 | 28.86 |
| CDY24010 | Canola | plasma membrane | 32.18 | 28.27 |
| CDY29700 | Canola | cytosol | 34.95 | 28.13 |
| CDY02036 | Canola | cytosol | 28.03 | 27.65 |
| CDY56521 | Canola | cytosol, plastid | 34.6 | 27.4 |
| CDX97774 | Canola | cytosol | 32.87 | 27.3 |
| CDX84860 | Canola | cytosol | 32.53 | 26.63 |
| CDY54214 | Canola | cytosol | 32.53 | 26.4 |
| CDX76734 | Canola | cytosol | 31.83 | 26.36 |
| CDY12648 | Canola | cytosol | 11.07 | 25.4 |
| CDY29702 | Canola | cytosol | 30.45 | 25.36 |
| CDY02032 | Canola | cytosol | 24.91 | 25.09 |
| CDY51551 | Canola | cytosol | 23.18 | 24.45 |
| CDX91425 | Canola | cytosol | 29.41 | 24.43 |
| CDY17265 | Canola | cytosol | 35.29 | 24.34 |
| CDX90709 | Canola | cytosol | 28.37 | 24.33 |
| CDX84302 | Canola | cytosol | 30.1 | 24.3 |
| CDX74275 | Canola | cytosol | 29.41 | 24.15 |
| CDX74917 | Canola | cytosol | 28.72 | 23.85 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 29.41 | 23.48 |
| CDY72582 | Canola | mitochondrion | 30.45 | 23.34 |
| CDY17263 | Canola | cytosol | 28.72 | 23.12 |
| CDX97775 | Canola | mitochondrion | 30.1 | 23.08 |
| CDY50229 | Canola | cytosol | 29.41 | 23.04 |
| CDY41927 | Canola | cytosol | 28.37 | 22.91 |
| CDY66893 | Canola | mitochondrion | 29.41 | 22.73 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 28.37 | 22.71 |
| CDY05043 | Canola | cytosol | 28.37 | 22.71 |
| CDX90706 | Canola | cytosol | 28.72 | 22.62 |
| CDY05044 | Canola | nucleus | 28.72 | 22.62 |
| CDY05040 | Canola | cytosol | 28.37 | 22.34 |
| CDY22405 | Canola | cytosol, plastid | 28.03 | 22.31 |
| CDY27802 | Canola | cytosol | 27.34 | 22.13 |
| CDX79811 | Canola | cytosol | 26.99 | 22.03 |
| CDY69309 | Canola | cytosol | 28.03 | 21.95 |
| CDX72730 | Canola | cytosol | 29.41 | 21.63 |
| CDY24030 | Canola | cytosol | 30.8 | 21.55 |
| CDX91971 | Canola | cytosol | 29.76 | 21.08 |
| CDY20989 | Canola | cytosol | 25.26 | 20.98 |
| CDX84859 | Canola | cytosol | 19.38 | 20.44 |
| CDY67336 | Canola | cytosol | 9.34 | 13.64 |
| CDY02035 | Canola | cytosol, plastid | 8.3 | 12.12 |
| CDX74276 | Canola | cytosol | 5.88 | 11.89 |
| CDX91970 | Canola | cytosol | 5.88 | 11.89 |
| CDY28855 | Canola | cytosol | 3.46 | 11.49 |
| CDY05038 | Canola | cytosol | 8.65 | 11.11 |
| CDY43958 | Canola | cytosol | 2.08 | 10.53 |
| CDX90710 | Canola | cytosol | 4.5 | 8.9 |
| CDY64885 | Canola | cytosol | 4.5 | 8.84 |
| CDY41928 | Canola | cytosol | 2.77 | 6.4 |
Protein Annotations
| EnsemblPlants:CDY64633 | EnsemblPlantsGene:GSBRNA2T00042465001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFAM:PF01344 | ProteinID:CDY64633 | ProteinID:CDY64633.1 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EDBDFF | UniProt:A0A078JAP7 | MapMan:35.1 | : |
Description
BnaCnng44470DBnaCnng44470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAP7]
Coordinates
chrLK034507:-:1528..5460
Molecular Weight (calculated)
32810.6 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.131
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNHFEKKQI YYKNRIKEQC YSIFGVFISL YLAEDEKSSK PTSSLVLPSL PEDVIIDILA CSSRCDYPKP SLVSKHFRSL IASPDLQARR SLLACTEHCL
101: YVVFYQANTM DLDMWSILRR KANGSRCLTR ISSTLPVLDK YSTTSAAVGS RIYVFGGRNH KNMTTNAFCI DCRSHTVEPL PSILVPLFCK FVGFIHGKIY
201: VMGYCSPYRE KAMLMFDTET QMWELIEPYY IIYRELNIID DIAIAGGRKR LRNLAPRNSC GSTFLGQPDP SASTSGTSSD FFDEINLNA
101: YVVFYQANTM DLDMWSILRR KANGSRCLTR ISSTLPVLDK YSTTSAAVGS RIYVFGGRNH KNMTTNAFCI DCRSHTVEPL PSILVPLFCK FVGFIHGKIY
201: VMGYCSPYRE KAMLMFDTET QMWELIEPYY IIYRELNIID DIAIAGGRKR LRNLAPRNSC GSTFLGQPDP SASTSGTSSD FFDEINLNA
001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
Arabidopsis Description
F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.