CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84860	Canola	cytosol	76.51	89.52
CDX84859	Canola	cytosol	38.5	58.03
CDX97774	Canola	cytosol	43.83	52.01
CDY28855	Canola	cytosol	10.9	51.72
CDY17264	Canola	cytosol	36.08	48.53
CDY24008	Canola	cytosol	15.25	48.46
CDX90710	Canola	cytosol	16.95	47.95
CDX76734	Canola	cytosol	40.19	47.56
CDY29702	Canola	cytosol	39.95	47.55
CDY56521	Canola	cytosol, plastid	41.4	46.85
CDY72582	Canola	mitochondrion	42.37	46.42
CDX97775	Canola	mitochondrion	42.13	46.15
CDY54214	Canola	cytosol	39.47	45.79
CDY05038	Canola	cytosol	24.94	45.78
CDY66893	Canola	mitochondrion	41.4	45.72
CDX84843	Canola	cytosol	28.81	45.25
CDY47117	Canola	cytosol	38.98	44.97
CDY64885	Canola	cytosol	15.98	44.9
CDY29700	Canola	cytosol	38.98	44.85
CDX84844	Canola	plasma membrane	37.77	44.57
CDY28882	Canola	cytosol, plastid	18.64	44.51
CDY05037	Canola	nucleus	7.75	44.44
CDY41928	Canola	cytosol	13.32	44.0
CDY43958	Canola	cytosol	6.05	43.86
CDY17263	Canola	cytosol	38.01	43.73
CDY29701	Canola	cytosol	14.29	43.7
CDY51551	Canola	cytosol	28.81	43.43
CDX90705	Canola	cytosol, nucleus, plastid	37.77	43.09
CDX84302	Canola	cytosol	37.29	43.02
CDY05044	Canola	nucleus	38.01	42.78
CDY05039	Canola	cytosol, nucleus, plastid	37.05	42.38
CDY12648	Canola	cytosol	12.83	42.06
CDX74917	Canola	cytosol	35.35	41.95
CDY24010	Canola	plasma membrane	33.41	41.95
CDX90709	Canola	cytosol	34.14	41.84
CDX79811	Canola	cytosol	35.84	41.81
CDY05040	Canola	cytosol	37.05	41.69
CDY02036	Canola	cytosol	29.54	41.64
CDY05043	Canola	cytosol	36.32	41.55
CDY17265	Canola	cytosol	42.13	41.53
CDX91425	Canola	cytosol	34.62	41.09
CDY02032	Canola	cytosol	28.33	40.77
CDX90706	Canola	cytosol	36.08	40.6
CDY41927	Canola	cytosol	35.11	40.5
CDY50229	Canola	cytosol	36.08	40.38
CDY22405	Canola	cytosol, plastid	35.35	40.22
CDY69309	Canola	cytosol	35.84	40.11
CDY20989	Canola	cytosol	32.93	39.08
CDX72730	Canola	cytosol	36.8	38.68
CDY27802	Canola	cytosol	33.17	38.38
CDY05045	Canola	cytosol	12.11	37.88
CDY67336	Canola	cytosol	17.68	36.87
CDY41929	Canola	cytosol	16.71	36.51
CDX74275	Canola	cytosol	30.75	36.08
CDX91971	Canola	cytosol	31.72	32.11
CDY64633	Canola	cytosol, nucleus, plasma membrane	21.55	30.8
CDY02035	Canola	cytosol, plastid	13.08	27.27
CDX91970	Canola	cytosol	4.84	13.99
CDX74276	Canola	cytosol	4.84	13.99

Protein Annotations

EnsemblPlants:CDY24030	EnsemblPlantsGene:GSBRNA2T00024556001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY24030	ProteinID:CDY24030.1	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE1C9D	UniProt:A0A078GC46	MapMan:35.1	:

Description

BnaC03g16610DBnaC03g16610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC46]

Coordinates

chrLK032152:-:551302..556472

Molecular Weight (calculated)

47467.6 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.203

Length

413 amino acids

Sequence
(BLAST)

001: MAKEEHSSQT PSLITSLPQD AIVDIFARMS RFDYPTLSLV CKHFRSIVTS PEIFTRRALL GRTEHCLYVV LCLQNRTRIY ILRKNKTNGD TSLVLIPSLP
101: AMPMYLNFVA AGSRIYAFAR KSDYEMMTLS IGCGSHSVQP FPSMPTHLNL IVAGIIEGRI YGVGCRFSSE EWERVMVVFD TKTQVWEPGM ISVMKEGFMC
201: GCVVMADKIY TRDYANTFVY DPKENKWEKD EMLNLHKWEN ACVVDDVLYY LDCNEKELRA YDGKQSCWQV VKGLEALLPE TRRRKEWSQT VNYDGKLALF
301: YPKENCEIWC AEILLETRKG GEIWGTVECC RHLVTSQSCF MKALDDFGID CGSHTVQPLP DVPVPMSPRM ADIIKGRIYV IGYDNGWERV MVVFNTETQM
401: WEPRMIKTRR GGN

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.