Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05037 | Canola | nucleus | 24.44 | 45.83 |
| CDY05045 | Canola | cytosol | 35.56 | 36.36 |
| CDY24008 | Canola | cytosol | 33.33 | 34.62 |
| Bra021608.1-P | Field mustard | cytosol | 72.59 | 28.99 |
| CDY41929 | Canola | cytosol | 32.59 | 23.28 |
| CDY29700 | Canola | cytosol | 59.26 | 22.28 |
| CDY51551 | Canola | cytosol | 42.22 | 20.8 |
| CDY28882 | Canola | cytosol, plastid | 25.93 | 20.23 |
| CDY17264 | Canola | cytosol | 45.93 | 20.2 |
| CDY02032 | Canola | cytosol | 40.74 | 19.16 |
| CDX84843 | Canola | cytosol | 36.3 | 18.63 |
| CDY02036 | Canola | cytosol | 40.0 | 18.43 |
| CDX84860 | Canola | cytosol | 45.19 | 17.28 |
| CDY29702 | Canola | cytosol | 42.22 | 16.43 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 34.81 | 16.26 |
| CDY47117 | Canola | cytosol | 42.96 | 16.2 |
| CDY05044 | Canola | nucleus | 42.22 | 15.53 |
| CDX97774 | Canola | cytosol | 40.0 | 15.52 |
| CDY24010 | Canola | plasma membrane | 37.78 | 15.5 |
| CDY56521 | Canola | cytosol, plastid | 41.48 | 15.34 |
| CDY05043 | Canola | cytosol | 40.74 | 15.24 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 40.74 | 15.19 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 40.0 | 14.96 |
| CDY50229 | Canola | cytosol | 40.74 | 14.91 |
| CDX97775 | Canola | mitochondrion | 41.48 | 14.85 |
| CDY17265 | Canola | cytosol | 45.93 | 14.8 |
| CDY17263 | Canola | cytosol | 39.26 | 14.76 |
| CDX90706 | Canola | cytosol | 40.0 | 14.71 |
| CDX74917 | Canola | cytosol | 37.78 | 14.66 |
| CDX76734 | Canola | cytosol | 37.78 | 14.61 |
| CDY54214 | Canola | cytosol | 38.52 | 14.61 |
| CDY72582 | Canola | mitochondrion | 40.74 | 14.59 |
| CDY05040 | Canola | cytosol | 39.26 | 14.44 |
| CDX91425 | Canola | cytosol | 37.04 | 14.37 |
| CDY24030 | Canola | cytosol | 43.7 | 14.29 |
| CDX84844 | Canola | plasma membrane | 37.04 | 14.29 |
| CDX90709 | Canola | cytosol | 35.56 | 14.24 |
| CDY66893 | Canola | mitochondrion | 39.26 | 14.17 |
| CDX79811 | Canola | cytosol | 37.04 | 14.12 |
| CDY22405 | Canola | cytosol, plastid | 37.78 | 14.05 |
| CDX84302 | Canola | cytosol | 37.04 | 13.97 |
| CDY41927 | Canola | cytosol | 36.3 | 13.69 |
| CDY27802 | Canola | cytosol | 35.56 | 13.45 |
| CDX74275 | Canola | cytosol | 34.07 | 13.07 |
| CDX72730 | Canola | cytosol | 37.78 | 12.98 |
| CDY69309 | Canola | cytosol | 34.81 | 12.74 |
| CDY20989 | Canola | cytosol | 32.59 | 12.64 |
| CDX91971 | Canola | cytosol | 34.81 | 11.52 |
| CDX84859 | Canola | cytosol | 19.26 | 9.49 |
| CDY02035 | Canola | cytosol, plastid | 12.59 | 8.59 |
| CDX91970 | Canola | cytosol | 8.89 | 8.39 |
| CDX74276 | Canola | cytosol | 8.89 | 8.39 |
| CDX90710 | Canola | cytosol | 6.67 | 6.16 |
| CDY41928 | Canola | cytosol | 2.96 | 3.2 |
| CDY05038 | Canola | cytosol | 5.19 | 3.11 |
| CDY67336 | Canola | cytosol | 4.44 | 3.03 |
| CDY12648 | Canola | cytosol | 2.22 | 2.38 |
| CDY64885 | Canola | cytosol | 2.22 | 2.04 |
| CDY43958 | Canola | cytosol | 0.74 | 1.75 |
| CDY28855 | Canola | cytosol | 0.74 | 1.15 |
Protein Annotations
| EnsemblPlants:CDY29701 | EnsemblPlantsGene:GSBRNA2T00043479001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 |
| ProteinID:CDY29701 | ProteinID:CDY29701.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EEE977 | UniProt:A0A078GW21 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA04g17260DBnaA04g17260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW21]
Coordinates
chrLK032241:-:422040..423132
Molecular Weight (calculated)
15613.6 Da
IEP (calculated)
8.697
GRAVY (calculated)
-0.376
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNTRREDE QPPEPTSLIT SFPKDAIFDI LTRLPRYEYS TLSLVSKQFR SLVRSPELYE RRSLIGVTEP FFYALFYDSQ SRNTRWNILH RKANGNLRLA
101: LIHSLPAMDD YGSFVTHCGT TPQHACTHNF LAVMV
101: LIHSLPAMDD YGSFVTHCGT TPQHACTHNF LAVMV
001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
Arabidopsis Description
F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.