CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28882	Canola	cytosol, plastid	34.1	68.79
CDY54214	Canola	cytosol	68.77	67.42
CDY28855	Canola	cytosol	15.47	62.07
CDY56521	Canola	cytosol, plastid	64.18	61.37
CDY24008	Canola	cytosol	19.2	51.54
CDX97774	Canola	cytosol	50.72	50.86
CDY05037	Canola	nucleus	10.03	48.61
CDX84860	Canola	cytosol	47.85	47.31
CDX84843	Canola	cytosol	35.53	47.15
CDX84859	Canola	cytosol	36.96	47.08
CDY02036	Canola	cytosol	39.26	46.76
CDY17263	Canola	cytosol	47.85	46.52
CDX97775	Canola	mitochondrion	50.14	46.42
CDY29702	Canola	cytosol	46.13	46.4
CDX84302	Canola	cytosol	47.56	46.37
CDY72582	Canola	mitochondrion	49.86	46.15
CDX90710	Canola	cytosol	19.2	45.89
CDY43958	Canola	cytosol	7.45	45.61
CDY17264	Canola	cytosol	40.11	45.6
CDY66893	Canola	mitochondrion	48.71	45.45
CDY29700	Canola	cytosol	46.7	45.4
CDY47117	Canola	cytosol	46.42	45.25
CDX84844	Canola	plasma membrane	44.99	44.86
CDY41928	Canola	cytosol	16.05	44.8
CDY64885	Canola	cytosol	18.34	43.54
CDY02032	Canola	cytosol	35.53	43.21
CDY51551	Canola	cytosol	33.81	43.07
CDY41927	Canola	cytosol	44.13	43.02
CDY05040	Canola	cytosol	44.99	42.78
CDY22405	Canola	cytosol, plastid	44.41	42.7
CDX90706	Canola	cytosol	44.7	42.51
CDY50229	Canola	cytosol	44.7	42.28
CDY24010	Canola	plasma membrane	39.83	42.25
CDY12648	Canola	cytosol	15.19	42.06
CDY05043	Canola	cytosol	43.27	41.83
CDX90705	Canola	cytosol, nucleus, plastid	43.27	41.71
CDY05039	Canola	cytosol, nucleus, plastid	42.98	41.55
CDY17265	Canola	cytosol	49.86	41.53
CDY69309	Canola	cytosol	43.84	41.46
CDX74917	Canola	cytosol	41.26	41.38
CDX91425	Canola	cytosol	41.26	41.38
CDX90709	Canola	cytosol	39.83	41.25
CDX79811	Canola	cytosol	41.83	41.24
CDY05044	Canola	nucleus	43.27	41.14
CDY05038	Canola	cytosol	26.36	40.89
CDY27802	Canola	cytosol	41.55	40.62
CDX72730	Canola	cytosol	45.56	40.46
CDY24030	Canola	cytosol	47.56	40.19
CDY05045	Canola	cytosol	15.19	40.15
CDY20989	Canola	cytosol	39.26	39.37
CDY41929	Canola	cytosol	20.92	38.62
CDY67336	Canola	cytosol	21.49	37.88
CDX74275	Canola	cytosol	38.11	37.78
CDY29701	Canola	cytosol	14.61	37.78
CDX91971	Canola	cytosol	38.11	32.6
CDY64633	Canola	cytosol, nucleus, plasma membrane	26.36	31.83
CDY02035	Canola	cytosol, plastid	14.9	26.26
CDX91970	Canola	cytosol	4.58	11.19
CDX74276	Canola	cytosol	4.58	11.19

Protein Annotations

EnsemblPlants:CDX76734	EnsemblPlantsGene:GSBRNA2T00127222001	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX76734	ProteinID:CDX76734.1
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF4C35	MapMan:35.1	:

Description

BnaC08g33200D

Coordinates

chrLK031808:+:750830..751879

Molecular Weight (calculated)

39539.5 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.125

Length

349 amino acids

Sequence
(BLAST)

001: MSWAEKKRSP TPSPITSLPE DVVVDILARV PICNYPRVSL VSKRFRSLVS SPEIYARRSS LGCTEHCLCV VLRNRDDCVN RLFTLRRRKE NGNSNRRLVL
101: IPGSPDMPPE GSFVAVGSRL YVFDGMTSRA FFIDCTSHTV QHLPKMPAPM SDTAADVIGG RIYVIGFISS KSEAMVVFDT ETQTWVTKPE TCEMYLSGGL
201: AVMAGKMYAR GFEDSFVYDP KESKWETDEV LDSKDWENAC VVDDVLYFYD YIDDELRAYD PEHKCWGVVK GLDDFLAEMR RVGCHLARTV SYASKLVLFF
301: HRQEIICCAE ISLEIRKGGQ IWGKDVDQWC DHALIAGYFI ITKSLDVVL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.