CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05044	Canola	nucleus	91.99	90.74
CDY05038	Canola	cytosol	53.04	85.33
CDY05037	Canola	nucleus	15.75	79.17
CDY05045	Canola	cytosol	27.62	75.76
CDX90710	Canola	cytosol	30.39	75.34
CDY41928	Canola	cytosol	25.14	72.8
CDY05039	Canola	cytosol, nucleus, plastid	67.96	68.14
CDY05040	Canola	cytosol	69.06	68.12
CDY50229	Canola	cytosol	69.34	68.02
CDY05043	Canola	cytosol	67.68	67.87
CDX79811	Canola	cytosol	65.47	66.95
CDY20989	Canola	cytosol	63.81	66.38
CDX90706	Canola	cytosol	66.85	65.94
CDY69309	Canola	cytosol	67.13	65.85
CDY41927	Canola	cytosol	64.64	65.36
CDY27802	Canola	cytosol	63.54	64.43
CDX90709	Canola	cytosol	59.94	64.39
CDY51551	Canola	cytosol	48.62	64.23
CDY67336	Canola	cytosol	34.81	63.64
CDY41929	Canola	cytosol	33.15	63.49
CDY24008	Canola	cytosol	17.4	48.46
CDY28855	Canola	cytosol	11.05	45.98
CDX84843	Canola	cytosol	33.15	45.63
CDX84860	Canola	cytosol	42.82	43.91
CDX84859	Canola	cytosol	33.15	43.8
CDX97774	Canola	cytosol	41.99	43.68
CDX76734	Canola	cytosol	41.71	43.27
CDY29702	Canola	cytosol	41.16	42.94
CDX97775	Canola	mitochondrion	44.48	42.71
CDY17264	Canola	cytosol	36.19	42.67
CDY72582	Canola	mitochondrion	44.2	42.44
CDY66893	Canola	mitochondrion	43.65	42.25
CDY47117	Canola	cytosol	41.71	42.18
CDY02036	Canola	cytosol	33.98	41.98
CDY54214	Canola	cytosol	40.88	41.57
CDX84302	Canola	cytosol	40.88	41.34
CDY29700	Canola	cytosol	40.88	41.23
CDX84844	Canola	plasma membrane	39.78	41.14
CDY22405	Canola	cytosol, plastid	40.88	40.77
CDY29701	Canola	cytosol	15.19	40.74
CDY24010	Canola	plasma membrane	37.02	40.73
CDY56521	Canola	cytosol, plastid	40.61	40.27
CDY64885	Canola	cytosol	16.3	40.14
CDX74917	Canola	cytosol	38.4	39.94
CDY28882	Canola	cytosol, plastid	19.06	39.88
CDY17263	Canola	cytosol	39.5	39.83
CDX91425	Canola	cytosol	37.29	38.79
CDX72730	Canola	cytosol	41.99	38.68
CDY43958	Canola	cytosol	6.08	38.6
CDY12648	Canola	cytosol	13.26	38.1
CDY02032	Canola	cytosol	30.11	37.98
CDY24030	Canola	cytosol	43.09	37.77
CDY17265	Canola	cytosol	42.54	36.75
CDX74275	Canola	cytosol	35.64	36.65
CDX91971	Canola	cytosol	35.91	31.86
CDY64633	Canola	cytosol, nucleus, plasma membrane	23.48	29.41
CDY02035	Canola	cytosol, plastid	15.19	27.78
CDX91970	Canola	cytosol	6.63	16.78
CDX74276	Canola	cytosol	6.63	16.78

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX90705	ProteinID:CDX90705	ProteinID:CDX90705.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151378001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE9B09

Description

BnaA03g23850D

Coordinates

chrLK031864:+:69156..70819

Molecular Weight (calculated)

41362.0 Da

IEP (calculated)

8.155

GRAVY (calculated)

-0.255

Length

362 amino acids

Sequence
(BLAST)

001: MSELMELSVS PLIPSLPDDV TLDIVARVPR SHYPTLSLVS KKFRKLIASP KLYKRRSQLG ITQHRLYAFL RNRNTGDCRF YILHRKLNSR NRLVIVRSLP
101: PVSYRGSFVS VGSKVYVFND VDALCIDCAS HTAQAIPDMP QRFSATPMPS KVANVIDGKV YLIGDSRFTS DHGMSWRKTV MVLDSETQVW EPVMMKEDMW
201: VGALWSDAVV LEDKICMKGH RNANSFVYEP KEKKWELMDE VLNSKHWESA CVVDDLLYYH DCSEKALRAY DPKQSRWSVV YGLDEFLASE CAQSKWPNTV
301: KCGEKKLALF FPKKHDGKQV ICCAEIALER RQDGEVWGKM ESCDVVIEDG PFDMVKCVSV TV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.