CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001029.1-P	Field mustard	cytosol	98.01	98.01
CDX91971	Canola	cytosol	96.31	83.09
CDY24008	Canola	cytosol	18.47	50.0
CDY05037	Canola	nucleus	9.94	48.61
CDY22405	Canola	cytosol, plastid	43.47	42.15
CDX84843	Canola	cytosol	30.97	41.44
CDY28882	Canola	cytosol, plastid	19.89	40.46
CDX72730	Canola	cytosol	44.89	40.2
CDY05045	Canola	cytosol	15.06	40.15
CDX76734	Canola	cytosol	37.78	38.11
CDY02036	Canola	cytosol	31.53	37.88
CDY29702	Canola	cytosol	36.93	37.46
CDY29700	Canola	cytosol	37.78	37.05
CDY56521	Canola	cytosol, plastid	38.35	36.99
CDX84860	Canola	cytosol	36.65	36.54
CDY41929	Canola	cytosol	19.6	36.51
CDX84844	Canola	plasma membrane	36.08	36.29
CDX97774	Canola	cytosol	35.8	36.21
CDY47117	Canola	cytosol	36.36	35.75
CDX90705	Canola	cytosol, nucleus, plastid	36.65	35.64
CDX91425	Canola	cytosol	35.23	35.63
CDY24010	Canola	plasma membrane	33.24	35.56
CDY51551	Canola	cytosol	27.56	35.4
CDY17264	Canola	cytosol	30.68	35.18
CDY54214	Canola	cytosol	35.23	34.83
CDX90709	Canola	cytosol	33.24	34.72
CDX74917	Canola	cytosol	34.09	34.48
CDY05040	Canola	cytosol	35.8	34.33
CDY05044	Canola	nucleus	35.8	34.33
CDY29701	Canola	cytosol	13.07	34.07
CDX90706	Canola	cytosol	35.51	34.06
CDY05039	Canola	cytosol, nucleus, plastid	34.66	33.8
CDX84302	Canola	cytosol	34.09	33.52
CDY41927	Canola	cytosol	34.09	33.52
CDY05043	Canola	cytosol	34.38	33.52
CDY27802	Canola	cytosol	33.81	33.33
CDX97775	Canola	mitochondrion	35.51	33.16
CDY50229	Canola	cytosol	34.66	33.06
CDY72582	Canola	mitochondrion	35.23	32.89
CDY66893	Canola	mitochondrion	34.66	32.62
CDY17263	Canola	cytosol	33.24	32.59
CDY69309	Canola	cytosol	34.09	32.52
CDY28855	Canola	cytosol	7.95	32.18
AT3G10510.1	Thale cress	cytosol	33.81	32.08
CDX79811	Canola	cytosol	31.53	31.36
CDX84859	Canola	cytosol	24.15	31.02
CDX90710	Canola	cytosol	12.78	30.82
CDY17265	Canola	cytosol	36.65	30.79
CDY24030	Canola	cytosol	36.08	30.75
CDY64885	Canola	cytosol	12.78	30.61
CDY20989	Canola	cytosol	29.55	29.89
CDY05038	Canola	cytosol	19.03	29.78
CDY64633	Canola	cytosol, nucleus, plasma membrane	24.15	29.41
CDY12648	Canola	cytosol	10.51	29.37
CDY41928	Canola	cytosol	10.23	28.8
CDY02032	Canola	cytosol	23.01	28.22
CDY67336	Canola	cytosol	14.49	25.76
CDY43958	Canola	cytosol	3.98	24.56
CDY02035	Canola	cytosol, plastid	11.36	20.2
CDX74276	Canola	cytosol	6.82	16.78
CDX91970	Canola	cytosol	6.82	16.78

Protein Annotations

EnsemblPlants:CDX74275	EnsemblPlantsGene:GSBRNA2T00112064001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	ProteinID:CDX74275	ProteinID:CDX74275.1
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EDB483	MapMan:35.1	:

Description

BnaA03g27720D

Coordinates

chrLK031800:+:2038815..2039873

Molecular Weight (calculated)

40330.4 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.167

Length

352 amino acids

Sequence
(BLAST)

001: MAMCWITSLP EDVIIECVAR VPRRYYPSLS LVSKFFRSLI GSPQLYARRS LLDRTECCLY VTIYSHDDDY DRLYTLRQKI NSSGDYCLVP IPSLPPMPSS
101: GSYVAVGSKI YVMGGSCFEV SSNALTLIDC PLHTANHHLP NMPRAVASSV SGYINEKIYV IGGCRSRFPV FSEGPMDVMV FDVKSETWES KTRPDNLVFD
201: WYSNSAVTWD DKIYFRVLKH GFVYDPSQDK MEKDDVLKSY HWVGSECVIE GVLYYYSTAS KILRSYDLKE RSWKRVKGEI GLSGTTCART VTYDKKVVVI
301: FEKDIDRNKV ELWCAEIKLE RDEQGEICAR LDWCGCVFEG HSRLMNCLVL KF

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.