Factsheet for Bra001029.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74275	Canola	cytosol	98.01	98.01
CDX91971	Canola	cytosol	96.02	82.84
Bra033585.1-P	Field mustard	cytosol, plastid	42.61	41.32
Bra022791.1-P	Field mustard	cytosol	37.5	38.04
Bra022790.1-P	Field mustard	plasma membrane	34.09	37.5
Bra021607.1-P	Field mustard	cytosol	36.93	37.46
Bra021610.1-P	Field mustard	cytosol	37.5	37.08
Bra004072.1-P	Field mustard	cytosol, plastid	38.35	36.99
Bra022777.1-P	Field mustard	cytosol	36.93	36.83
Bra021609.1-P	Field mustard	cytosol	37.22	36.39
Bra021684.1-P	Field mustard	cytosol	35.23	35.63
Bra005410.1-P	Field mustard	cytosol	35.8	35.1
Bra005142.1-P	Field mustard	cytosol	34.38	34.77
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	34.66	34.27
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	35.23	34.25
Bra000668.1-P	Field mustard	cytosol	32.1	34.04
Bra039467.1-P	Field mustard	cytosol	33.81	33.71
Bra000665.1-P	Field mustard	cytosol	34.66	33.24
Bra022778.1-P	Field mustard	cytosol	33.52	33.24
Bra021683.1-P	Field mustard	mitochondrion	34.66	32.36
Bra022024.1-P	Field mustard	cytosol	14.49	32.08
Bra020387.1-P	Field mustard	cytosol	33.52	31.98
AT3G10510.1	Thale cress	cytosol	33.52	31.81
Bra005412.1-P	Field mustard	cytosol	32.39	31.75
Bra000669.1-P	Field mustard	cytosol	13.07	31.51
Bra004774.1-P	Field mustard	cytosol	31.53	31.36
Bra021608.1-P	Field mustard	cytosol	29.55	30.77
Bra016843.1-P	Field mustard	cytosol	29.83	30.17
Bra033997.1-P	Field mustard	cytosol	19.6	29.74
Bra010511.1-P	Field mustard	cytosol	13.07	24.73
Bra005411.1-P	Field mustard	cytosol	36.08	22.8

Protein Annotations

EnsemblPlants:Bra001029.1	EnsemblPlants:Bra001029.1-P	EnsemblPlantsGene:Bra001029	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254085B	UniProt:M4CA00	MapMan:35.1	:

Description

AT4G38940 (E=1e-074) | kelch repeat-containing F-box family protein

Coordinates

chrA03:-:14443447..14444505

Molecular Weight (calculated)

40595.9 Da

IEP (calculated)

7.300

GRAVY (calculated)

-0.172

Length

352 amino acids

Sequence
(BLAST)

001: MAMCWITSLP EDVIIECVAR VPRRYYPSLS LVSKFFRSLI ASPQLYARRS LLDRTEYCLY VTIYSHDDDY DRLYTLRQKI NSSGDYCLVP IPSLPPMPSS
101: GSYVAVGSKI YIMGGSCFEV SSNALTLIDC PLHMANHHLP NMPRAVASSV SGYINEKIYV IGGCRSRFPV FSEGPMDVMV FDVKSETWES KTRPDNLVFD
201: WYSNSAVTWD DKIYFRVLKH GFVYDPSQDK MEKDDMLKSY HWVGSECVIE RVLYYYSTAS KILRSYDLKE RCWKRVKGEI GLSGTTCART VTYDKKVVVI
301: FEKDIDRNKV ELWCAEIKLE RDEQGEICAR LDWCGCVFEG HSRLMNCLVL KF

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.