Factsheet for Bra039467.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27802	Canola	cytosol	89.8	88.8
CDY41929	Canola	cytosol	46.18	86.24
CDY41928	Canola	cytosol	29.18	82.4
Bra000668.1-P	Field mustard	cytosol	66.57	70.78
Bra004774.1-P	Field mustard	cytosol	69.12	68.93
Bra000669.1-P	Field mustard	cytosol	27.2	65.75
Bra020387.1-P	Field mustard	cytosol	66.57	63.69
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	64.31	62.71
Bra016843.1-P	Field mustard	cytosol	60.91	61.78
Bra000665.1-P	Field mustard	cytosol	63.74	61.31
Bra010511.1-P	Field mustard	cytosol	29.75	56.45
Bra022024.1-P	Field mustard	cytosol	20.11	44.65
Bra033997.1-P	Field mustard	cytosol	28.33	43.1
Bra021684.1-P	Field mustard	cytosol	41.64	42.24
Bra005410.1-P	Field mustard	cytosol	41.93	41.23
Bra022778.1-P	Field mustard	cytosol	41.36	41.13
Bra022791.1-P	Field mustard	cytosol	40.23	40.92
Bra021683.1-P	Field mustard	mitochondrion	43.63	40.85
Bra004072.1-P	Field mustard	cytosol, plastid	41.08	39.73
Bra022777.1-P	Field mustard	cytosol	39.38	39.38
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	39.66	39.33
Bra021609.1-P	Field mustard	cytosol	39.66	38.89
Bra033585.1-P	Field mustard	cytosol, plastid	39.94	38.84
Bra022790.1-P	Field mustard	plasma membrane	35.13	38.75
Bra021607.1-P	Field mustard	cytosol	37.68	38.33
Bra021610.1-P	Field mustard	cytosol	38.24	37.92
Bra005412.1-P	Field mustard	cytosol	37.96	37.33
Bra021608.1-P	Field mustard	cytosol	35.69	37.28
Bra005142.1-P	Field mustard	cytosol	36.26	36.78
Bra001029.1-P	Field mustard	cytosol	33.71	33.81
Bra005411.1-P	Field mustard	cytosol	42.21	26.75

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra039467	EnsemblPlants:Bra039467.1	EnsemblPlants:Bra039467.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	UniProt:M4FEE6	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254749C
SEG:seg	:	:	:	:	:

Description

AT4G38940 (E=1e-039) | kelch repeat-containing F-box family protein

Coordinates

chrA05:+:23473126..23474187

Molecular Weight (calculated)

40209.8 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.289

Length

353 amino acids

Sequence
(BLAST)

001: MSENMEKSPE PSSLPDDVTI EIVARVPISH YPILNRVSKS FRKLIASPTL YERRSQLGYK EHRVYAVLRK THDDFGFYIL HRKVGCSNRL VFAGSLPLMF
101: SSGSYVSVGS KVYGFSDLNA LSIDCTSHTV QPISDDPQRM TNKLANVIDK KVYLIGGSYF RAGSWDTWKS EVTVFDTETQ SWEPKEDMHV GLGPFRYDSV
201: VMEGKVYVKG DSTHKSFVYE PEERKWELMD EVLSSKAWEG ACVVDNVLYY HDRSETVLRA YDPEQSCWSV VNGLEEFLAV KTAHSIWSYA VTYGEKKLAL
301: FFLQKHEGKN VIFFAEIALE RRQGGEIRGK MESCDVVIED GLFEMAKFVS VTV

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.