Factsheet for Bra000664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05038	Canola	cytosol	51.66	83.11
CDY05037	Canola	nucleus	15.75	79.17
Bra000669.1-P	Field mustard	cytosol	30.94	76.71
CDY05045	Canola	cytosol	27.62	75.76
Bra016843.1-P	Field mustard	cytosol	63.26	65.8
Bra004774.1-P	Field mustard	cytosol	64.09	65.54
Bra039467.1-P	Field mustard	cytosol	62.71	64.31
Bra000665.1-P	Field mustard	cytosol	64.64	63.76
Bra020387.1-P	Field mustard	cytosol	64.92	63.69
Bra000668.1-P	Field mustard	cytosol	58.29	63.55
Bra010511.1-P	Field mustard	cytosol	30.66	59.68
Bra022777.1-P	Field mustard	cytosol	42.82	43.91
Bra022791.1-P	Field mustard	cytosol	41.44	43.23
Bra021684.1-P	Field mustard	cytosol	41.16	42.82
Bra022024.1-P	Field mustard	cytosol	18.78	42.77
Bra021607.1-P	Field mustard	cytosol	40.88	42.65
Bra005410.1-P	Field mustard	cytosol	42.27	42.62
Bra022778.1-P	Field mustard	cytosol	40.88	41.69
Bra033997.1-P	Field mustard	cytosol	26.24	40.95
Bra022790.1-P	Field mustard	plasma membrane	35.91	40.62
Bra021683.1-P	Field mustard	mitochondrion	42.27	40.58
Bra021609.1-P	Field mustard	cytosol	40.33	40.56
Bra021610.1-P	Field mustard	cytosol	39.5	40.17
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	39.5	40.17
Bra033585.1-P	Field mustard	cytosol, plastid	40.06	39.94
Bra004072.1-P	Field mustard	cytosol, plastid	40.06	39.73
Bra021608.1-P	Field mustard	cytosol	36.46	39.05
Bra005142.1-P	Field mustard	cytosol	37.29	38.79
Bra005412.1-P	Field mustard	cytosol	38.4	38.72
Bra001029.1-P	Field mustard	cytosol	34.25	35.23
Bra005411.1-P	Field mustard	cytosol	42.27	27.47

Protein Annotations

EnsemblPlants:Bra000664.1	EnsemblPlants:Bra000664.1-P	EnsemblPlantsGene:Bra000664	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254027C	UniProt:M4C8Y6	MapMan:35.1	:

Description

AT4G38940 (E=6e-063) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:12356422..12357510

Molecular Weight (calculated)

40959.5 Da

IEP (calculated)

7.593

GRAVY (calculated)

-0.202

Length

362 amino acids

Sequence
(BLAST)

001: MEQFLELSVS PLIPSLPDDV TLDIVARVPR SHYPTLSLVS KKFRKLIASP KLYKRRSQLG ITQHRVYALL RNRDSGDCRF YILHRKLNSR NRLVIVRSLP
101: PVSSRGSFVS VGSKVYVFND VDALSIDCAS PTAQPIPDIP QRFSAAPMPS KVANVIDGKV CLIGDSRFTF EDGMSWSKTV MVLDAETQVW EPVMMKEDMW
201: VGALWSDAVV LEDKICMKGH RNANSFVYEP KEKKWELMDE VLNSKAWESA CVVDDLLYYH DCSEKALRAY DPKQSRWSVV YGLDEFLASE CAQSKWPNTV
301: KCGEKKLALF FPKKHDGKEV ICCAEIALER RQGGEVWGKM ESCDVVIEDG PFDMVKCASV TV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.