Factsheet for Bra022024.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000669.1-P	Field mustard	cytosol	34.59	37.67
Bra033997.1-P	Field mustard	cytosol	42.77	29.31
Bra010511.1-P	Field mustard	cytosol	28.93	24.73
Bra021607.1-P	Field mustard	cytosol	49.69	22.77
CDY47117	Canola	cytosol	50.94	22.63
Bra004072.1-P	Field mustard	cytosol, plastid	48.43	21.1
Bra022777.1-P	Field mustard	cytosol	46.54	20.96
Bra004774.1-P	Field mustard	cytosol	45.91	20.62
Bra021684.1-P	Field mustard	cytosol	44.65	20.4
Bra039467.1-P	Field mustard	cytosol	44.65	20.11
Bra021683.1-P	Field mustard	mitochondrion	47.17	19.89
Bra021608.1-P	Field mustard	cytosol	42.14	19.82
Bra005410.1-P	Field mustard	cytosol	44.65	19.78
Bra021610.1-P	Field mustard	cytosol	44.03	19.66
Bra022790.1-P	Field mustard	plasma membrane	38.99	19.38
Bra016843.1-P	Field mustard	cytosol	42.14	19.25
Bra021609.1-P	Field mustard	cytosol	43.4	19.17
Bra022778.1-P	Field mustard	cytosol	42.77	19.15
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	42.77	19.1
Bra005412.1-P	Field mustard	cytosol	42.77	18.94
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	42.77	18.78
Bra022791.1-P	Field mustard	cytosol	40.88	18.73
Bra000665.1-P	Field mustard	cytosol	42.14	18.26
Bra020387.1-P	Field mustard	cytosol	42.14	18.16
Bra000668.1-P	Field mustard	cytosol	37.74	18.07
Bra005142.1-P	Field mustard	cytosol	36.48	16.67
Bra033585.1-P	Field mustard	cytosol, plastid	37.11	16.25
Bra001029.1-P	Field mustard	cytosol	32.08	14.49
Bra005411.1-P	Field mustard	cytosol	44.03	12.57

Protein Annotations

EnsemblPlants:Bra022024.1	EnsemblPlants:Bra022024.1-P	EnsemblPlantsGene:Bra022024	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SUPFAM:SSF117281
UniParc:UPI0002545D63	UniProt:M4DZS7	MapMan:35.1	:	:	:

Description

AT4G38940 (E=8e-025) | kelch repeat-containing F-box family protein

Coordinates

chrA02:+:18636526..18637005

Molecular Weight (calculated)

18528.4 Da

IEP (calculated)

8.262

GRAVY (calculated)

-0.186

Length

159 amino acids

Sequence
(BLAST)

001: MVVFNIETKM WEHVMTEPEM NYALTTSNAC AVMADKIYTK ASYGSHVYEP KESKWQTEYM LNSKYWGNSC VVDDVLYYHD RVTNTLSAYD PIHKCWGVVE
101: GLKKFLAETR CSKWSYTVSY GRNVVLLFCR ICEIWCAKIS LERRQGGVIR VRLNGVTMF

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.