Factsheet for Bra020387.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69309	Canola	cytosol	94.58	94.58
Bra004774.1-P	Field mustard	cytosol	66.94	69.77
Bra000668.1-P	Field mustard	cytosol	60.98	67.77
Bra039467.1-P	Field mustard	cytosol	63.69	66.57
Bra016843.1-P	Field mustard	cytosol	61.79	65.52
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	63.69	64.92
Bra000669.1-P	Field mustard	cytosol	24.93	63.01
Bra000665.1-P	Field mustard	cytosol	61.79	62.13
Bra010511.1-P	Field mustard	cytosol	27.37	54.3
Bra022024.1-P	Field mustard	cytosol	18.16	42.14
Bra005410.1-P	Field mustard	cytosol	40.92	42.06
Bra022777.1-P	Field mustard	cytosol	39.84	41.64
Bra021684.1-P	Field mustard	cytosol	39.02	41.38
Bra033997.1-P	Field mustard	cytosol	26.02	41.38
Bra033585.1-P	Field mustard	cytosol, plastid	40.11	40.77
Bra021683.1-P	Field mustard	mitochondrion	41.46	40.58
Bra022778.1-P	Field mustard	cytosol	38.75	40.28
Bra021607.1-P	Field mustard	cytosol	37.67	40.06
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	38.21	39.61
Bra022791.1-P	Field mustard	cytosol	37.13	39.48
Bra005412.1-P	Field mustard	cytosol	38.21	39.28
Bra005142.1-P	Field mustard	cytosol	36.86	39.08
Bra004072.1-P	Field mustard	cytosol, plastid	38.48	38.9
Bra021609.1-P	Field mustard	cytosol	37.94	38.89
Bra021610.1-P	Field mustard	cytosol	36.86	38.2
Bra021608.1-P	Field mustard	cytosol	34.96	38.17
Bra022790.1-P	Field mustard	plasma membrane	32.79	37.81
Bra001029.1-P	Field mustard	cytosol	31.98	33.52
Bra005411.1-P	Field mustard	cytosol	42.01	27.83

Protein Annotations

EnsemblPlants:Bra020387.1	EnsemblPlants:Bra020387.1-P	EnsemblPlantsGene:Bra020387	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SEG:seg
SUPFAM:SSF117281	UniParc:UPI000254306E	UniProt:M4DV44	MapMan:35.1	:	:

Description

AT4G38940 (E=2e-045) | kelch repeat-containing F-box family protein

Coordinates

chrA02:-:6505910..6507019

Molecular Weight (calculated)

42060.8 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.161

Length

369 amino acids

Sequence
(BLAST)

001: MSELMEQFLA LSVSPPLIPS LPDDITVDIV AARVPLNHYP TLSHVSKSFR KLIASPTLYK RRSQLGITQH RVYAVLQSRK TRASSFYILH RKVDDCSNRL
101: VVVRSITLKS SCGNYVPVGS KVYVFNDEDA LSIDCTSHTS QSIPDIPQRM AYKVVNVVDE KKIYVIGDSV CHVVKEKGGM LRETWKKAVM VFDTQTQLWE
201: PKLVKEDMFL GVLWSDSVVM DGKIYMKDYS KGNSFVYEPD ERKWEFMDEV LNSKAWKGAC VVDNVLYYHD LRALRAYDPK KSCWSVVNGL GDFLVAKTAR
301: SRWCHAVNYG KEKLALFFHK NHDGKEVIFC AVIALERRQG GEIWGQMESC DVVNEDGLFD MVKFVTVSL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.