Factsheet for Bra021609.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29700	Canola	cytosol	96.94	97.21
Bra021610.1-P	Field mustard	cytosol	77.22	78.09
Bra021608.1-P	Field mustard	cytosol	55.0	58.58
Bra021607.1-P	Field mustard	cytosol	46.94	48.7
Bra021684.1-P	Field mustard	cytosol	46.67	48.28
Bra005410.1-P	Field mustard	cytosol	48.06	48.19
Bra022778.1-P	Field mustard	cytosol	46.67	47.32
Bra022777.1-P	Field mustard	cytosol	45.83	46.74
Bra022791.1-P	Field mustard	cytosol	45.0	46.69
Bra004072.1-P	Field mustard	cytosol, plastid	46.67	46.03
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	45.0	45.51
Bra033997.1-P	Field mustard	cytosol	28.33	43.97
Bra022790.1-P	Field mustard	plasma membrane	38.61	43.44
Bra022024.1-P	Field mustard	cytosol	19.17	43.4
Bra005142.1-P	Field mustard	cytosol	40.83	42.24
Bra021683.1-P	Field mustard	mitochondrion	44.17	42.18
Bra005412.1-P	Field mustard	cytosol	41.67	41.78
Bra000669.1-P	Field mustard	cytosol	16.67	41.1
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	40.56	40.33
Bra039467.1-P	Field mustard	cytosol	38.89	39.66
Bra000668.1-P	Field mustard	cytosol	36.39	39.46
Bra004774.1-P	Field mustard	cytosol	38.61	39.27
Bra033585.1-P	Field mustard	cytosol, plastid	38.33	38.02
Bra020387.1-P	Field mustard	cytosol	38.89	37.94
Bra001029.1-P	Field mustard	cytosol	36.39	37.22
Bra016843.1-P	Field mustard	cytosol	35.83	37.07
Bra000665.1-P	Field mustard	cytosol	37.78	37.06
Bra010511.1-P	Field mustard	cytosol	16.94	32.8
Bra005411.1-P	Field mustard	cytosol	48.06	31.06

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra021609	EnsemblPlants:Bra021609.1	EnsemblPlants:Bra021609.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4DYL3	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002544424

Description

AT4G38940 (E=2e-065) | kelch repeat-containing F-box family protein

Coordinates

chrA04:+:13395729..13396811

Molecular Weight (calculated)

42044.6 Da

IEP (calculated)

8.625

GRAVY (calculated)

-0.315

Length

360 amino acids

Sequence
(BLAST)

001: MTSNVRRKNK QSLIMSLPED VIFDILARVP RCEYPTLSLV SKQLRSLVTS PEIYVRRSLL RVTEPCFYAL FYDSRSRNCR WHIIHRKANG NRCLVLIQSL
101: PAMNNVASFV AVDSRIYVFG GSDDHTKYYA LSIDCRFHTV EHLPKMPVPM SNTIADIIDG RIYVIGDHYY DKSKKVMLVF NTETQLWEHG TIKPNIEFGY
201: SPPSSCVAMA DKILYINDYH KSYVYEPKKS KWEKEEMLSS NKWRNACVVD NILYYYDYYR GHKLRTYDSK QRYWGAVKGL DLEELVPERN PHWIDTVSSY
301: SGKLALIFTY EGRTPYYLWS AEISLERRQG GEILGKVEWC DEVPVADNLL QVLRFLAVMV

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.