Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021609.1-P | Field mustard | cytosol | 97.21 | 96.94 |
| CDY29701 | Canola | cytosol | 22.28 | 59.26 |
| CDY02032 | Canola | cytosol | 42.9 | 53.66 |
| CDY28882 | Canola | cytosol, plastid | 23.96 | 49.71 |
| CDY02036 | Canola | cytosol | 40.11 | 49.15 |
| CDY29702 | Canola | cytosol | 47.35 | 48.99 |
| CDY05037 | Canola | nucleus | 9.75 | 48.61 |
| CDX97774 | Canola | cytosol | 46.8 | 48.28 |
| CDX84843 | Canola | cytosol | 35.1 | 47.91 |
| CDX84860 | Canola | cytosol | 45.96 | 46.74 |
| CDX84859 | Canola | cytosol | 35.65 | 46.72 |
| CDX76734 | Canola | cytosol | 45.4 | 46.7 |
| CDY47117 | Canola | cytosol | 46.24 | 46.37 |
| CDY56521 | Canola | cytosol, plastid | 46.8 | 46.03 |
| CDY28855 | Canola | cytosol | 11.14 | 45.98 |
| CDY54214 | Canola | cytosol | 45.4 | 45.79 |
| CDY24008 | Canola | cytosol | 16.43 | 45.38 |
| CDY17264 | Canola | cytosol | 38.72 | 45.28 |
| CDY12648 | Canola | cytosol | 15.88 | 45.24 |
| CDX84844 | Canola | plasma membrane | 42.62 | 43.71 |
| CDX97775 | Canola | mitochondrion | 45.68 | 43.5 |
| CDY66893 | Canola | mitochondrion | 45.13 | 43.32 |
| CDY72582 | Canola | mitochondrion | 45.4 | 43.24 |
| CDY64885 | Canola | cytosol | 17.55 | 42.86 |
| CDY41928 | Canola | cytosol | 14.76 | 42.4 |
| CDY43958 | Canola | cytosol | 6.69 | 42.11 |
| CDX74917 | Canola | cytosol | 40.39 | 41.67 |
| CDY24010 | Canola | plasma membrane | 38.16 | 41.64 |
| CDY17263 | Canola | cytosol | 41.5 | 41.5 |
| CDY05044 | Canola | nucleus | 42.34 | 41.42 |
| CDX90710 | Canola | cytosol | 16.71 | 41.1 |
| CDX91425 | Canola | cytosol | 39.83 | 41.09 |
| CDX84302 | Canola | cytosol | 40.95 | 41.06 |
| CDY17265 | Canola | cytosol | 47.91 | 41.05 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 41.23 | 40.88 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 40.95 | 40.72 |
| CDY05043 | Canola | cytosol | 40.67 | 40.44 |
| CDY05045 | Canola | cytosol | 14.76 | 40.15 |
| CDX90709 | Canola | cytosol | 37.6 | 40.06 |
| CDY50229 | Canola | cytosol | 40.95 | 39.84 |
| CDY27802 | Canola | cytosol | 39.55 | 39.78 |
| CDY05038 | Canola | cytosol | 24.79 | 39.56 |
| CDY51551 | Canola | cytosol | 30.08 | 39.42 |
| CDY69309 | Canola | cytosol | 40.39 | 39.3 |
| CDY41927 | Canola | cytosol | 39.0 | 39.11 |
| CDY24030 | Canola | cytosol | 44.85 | 38.98 |
| CDX79811 | Canola | cytosol | 38.44 | 38.98 |
| CDY22405 | Canola | cytosol, plastid | 39.28 | 38.84 |
| CDY41929 | Canola | cytosol | 20.33 | 38.62 |
| CDY05040 | Canola | cytosol | 39.28 | 38.42 |
| CDX90706 | Canola | cytosol | 38.72 | 37.87 |
| CDX74275 | Canola | cytosol | 37.05 | 37.78 |
| CDX72730 | Canola | cytosol | 41.23 | 37.66 |
| CDY20989 | Canola | cytosol | 36.21 | 37.36 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 28.13 | 34.95 |
| CDX91971 | Canola | cytosol | 37.05 | 32.6 |
| CDY67336 | Canola | cytosol | 17.83 | 32.32 |
| CDY02035 | Canola | cytosol, plastid | 15.6 | 28.28 |
| CDX91970 | Canola | cytosol | 6.13 | 15.38 |
| CDX74276 | Canola | cytosol | 6.13 | 15.38 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078GTA8 | EnsemblPlants:CDY29700 | ProteinID:CDY29700 | ProteinID:CDY29700.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00043478001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EE01EB | : | : | : | : | : |
Description
BnaA04g17270DBnaA04g17270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTA8]
Coordinates
chrLK032241:-:419178..420257
Molecular Weight (calculated)
42143.9 Da
IEP (calculated)
8.911
GRAVY (calculated)
-0.328
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNVRRKNK QSLIMSLPED VIFDILARVP RCEYPTLSLV SKQLRSLVTS PEIYVRRSLL RVTEPCFYAL FYDSRSRNCR WHIIHRKANG NRCLVLIQSL
101: PPMNNVACFV AVDSRIYVFG GYDDHTKYYA LSIDCRFHTV EHLPKMPVPM SNTIADIIDG RIYVIGDHYY DKSKKVMLVF NTETQLWELG TIKPNIEFGY
201: SPPSSCVAMA DKMYINDYHK SYVYEPKKSK WEKEEMLSSN KWRNACVVDN ILYYYDYFRG HKLRTYDSKQ RYWGTVKGLD LEELVPKRNP HWIDTVRSYS
301: GKLALIFTYE GRTPYYLWSA EISLERRQGG EILGKVEWCD EVPVADNLLQ VMRFLAVMV
101: PPMNNVACFV AVDSRIYVFG GYDDHTKYYA LSIDCRFHTV EHLPKMPVPM SNTIADIIDG RIYVIGDHYY DKSKKVMLVF NTETQLWELG TIKPNIEFGY
201: SPPSSCVAMA DKMYINDYHK SYVYEPKKSK WEKEEMLSSN KWRNACVVDN ILYYYDYFRG HKLRTYDSKQ RYWGTVKGLD LEELVPKRNP HWIDTVRSYS
301: GKLALIFTYE GRTPYYLWSA EISLERRQGG EILGKVEWCD EVPVADNLLQ VMRFLAVMV
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.