CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17263	Canola	cytosol	85.2	84.96
CDY28855	Canola	cytosol	12.85	52.87
CDY17264	Canola	cytosol	45.25	52.77
CDY24008	Canola	cytosol	17.6	48.46
CDY17265	Canola	cytosol	56.7	48.45
CDX76734	Canola	cytosol	46.37	47.56
CDX90710	Canola	cytosol	18.99	46.58
CDY05037	Canola	nucleus	9.22	45.83
CDX97774	Canola	cytosol	43.58	44.83
CDX84860	Canola	cytosol	44.13	44.76
CDY54214	Canola	cytosol	44.13	44.38
CDY43958	Canola	cytosol	6.98	43.86
CDX84843	Canola	cytosol	31.84	43.35
CDY47117	Canola	cytosol	43.3	43.3
CDY56521	Canola	cytosol, plastid	43.85	43.01
CDY29702	Canola	cytosol	41.62	42.94
CDX84859	Canola	cytosol	32.68	42.7
CDY02036	Canola	cytosol	34.92	42.66
CDX84844	Canola	plasma membrane	41.62	42.57
CDY72582	Canola	mitochondrion	44.69	42.44
CDX97775	Canola	mitochondrion	44.69	42.44
CDY05039	Canola	cytosol, nucleus, plastid	42.74	42.38
CDY41928	Canola	cytosol	14.53	41.6
CDY64885	Canola	cytosol	17.04	41.5
CDY05038	Canola	cytosol	25.98	41.33
CDY05043	Canola	cytosol	41.62	41.27
CDX90709	Canola	cytosol	38.83	41.25
CDY51551	Canola	cytosol	31.56	41.24
CDY66893	Canola	mitochondrion	43.02	41.18
CDY29700	Canola	cytosol	41.06	40.95
CDX90705	Canola	cytosol, nucleus, plastid	41.34	40.88
CDY05044	Canola	nucleus	41.9	40.87
CDY02032	Canola	cytosol	32.68	40.77
CDY05040	Canola	cytosol	41.62	40.6
CDX79811	Canola	cytosol	39.94	40.4
CDY69309	Canola	cytosol	41.62	40.38
CDY41927	Canola	cytosol	40.22	40.22
CDX90706	Canola	cytosol	41.06	40.05
CDY05045	Canola	cytosol	14.53	39.39
CDY20989	Canola	cytosol	38.27	39.37
CDY22405	Canola	cytosol, plastid	39.66	39.12
CDY50229	Canola	cytosol	40.22	39.02
CDY27802	Canola	cytosol	38.83	38.94
CDY24010	Canola	plasma membrane	35.75	38.91
CDY28882	Canola	cytosol, plastid	18.72	38.73
CDX74917	Canola	cytosol	37.15	38.22
CDY41929	Canola	cytosol	20.11	38.1
CDY67336	Canola	cytosol	20.95	37.88
CDX91425	Canola	cytosol	36.31	37.36
CDY24030	Canola	cytosol	43.02	37.29
CDX72730	Canola	cytosol	40.78	37.15
CDY29701	Canola	cytosol	13.97	37.04
CDY12648	Canola	cytosol	12.29	34.92
CDX74275	Canola	cytosol	33.52	34.09
CDY64633	Canola	cytosol, nucleus, plasma membrane	24.3	30.1
CDX91971	Canola	cytosol	33.24	29.17
CDY02035	Canola	cytosol, plastid	13.41	24.24
CDX91970	Canola	cytosol	5.59	13.99
CDX74276	Canola	cytosol	5.59	13.99

Protein Annotations

EnsemblPlants:CDX84302	EnsemblPlantsGene:GSBRNA2T00141404001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF12937	PFscan:PS50181	ProteinID:CDX84302	ProteinID:CDX84302.1	SEG:seg
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EC9547	MapMan:35.1	:

Description

BnaC04g10640D

Coordinates

chrLK031836:-:1649662..1650738

Molecular Weight (calculated)

40888.2 Da

IEP (calculated)

9.009

GRAVY (calculated)

-0.197

Length

358 amino acids

Sequence
(BLAST)

001: MSSSKEQPSE QPSLLPSLPD DIIIDILSRV RWCDYRTLSL VSKHFRSLIA SHALYARRSF LGCTERRLYV ALSNGVTTYH NPYILCLKAN GGNHRLVLIP
101: WPTNVPHVGS FANVGSKIYA FDTLNRYHHL PIPSVDCRFQ TVHLVSCMNA TMDVSVAGVI DGKIYVTGYT KTQWDTAAKM VMAVFDAETQ IWETATETII
201: GRPYGCVVMA GKMYRRDARN SFVYDPKESK WETDKRLNMF KWEGGCVVDD VLYYYDIRGG KVLRAYDPRK SSWVVVKGLE RLVAEGRFSE SYYTGSCGGK
301: LVLFFSKDRR IKGIRCAQIS LERRHHGRSE IWGKIDWCDD VLFRSDDLFV TKTLDVIL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.